Evidence map›Paper›PMID 30038431›Full record

ArticleScientific reports2018

Regulation of biomass degradation by alternative σ factors in cellulolytic clostridia.

Lizett Ortiz de Ora, Raphael Lamed, Ya-Jun Liu, Jian Xu, Qiu Cui, Yingang Feng, Yuval Shoham, Edward A Bayer, Iván Muñoz-Gutiérrez

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
  2. Article
  3. Current models in bacterial hemicellulase-encoding gene regulation.Applied microbiology and biotechnology · 2024
    Review
  4. Unique Fn3-like biosensor in σProtein science : a publication of the Protein Society · 2024
    Article
  5. Article
  6. Bacterial SEAL domains undergo autoproteolysis and function in regulated intramembrane proteolysis.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Utilization of Monosaccharides byMicroorganisms · 2021
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 2 countries.

Lizett Ortiz de OraDepartment of Molecular Microbiology and Biotechnology, Tel Aviv University, Tel Aviv, Israel.
Raphael LamedDepartment of Molecular Microbiology and Biotechnology, Tel Aviv University, Tel Aviv, Israel.
Ya-Jun LiuCAS Key Laboratory of Biofuels and Shandong Provincial Key Laboratory of Energy Genetics, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, Shandong, China.ORCID 0000-0002-0899-5968
Jian XuCAS Key Laboratory of Biofuels and Shandong Provincial Key Laboratory of Energy Genetics, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, Shandong, China.
Qiu CuiCAS Key Laboratory of Biofuels and Shandong Provincial Key Laboratory of Energy Genetics, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, Shandong, China.
Yingang FengCAS Key Laboratory of Biofuels and Shandong Provincial Key Laboratory of Energy Genetics, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, Shandong, China.ORCID 0000-0002-0879-1316
Yuval ShohamDepartment of Biotechnology and Food Engineering, Technion-IIT, Haifa, Israel.
Edward A BayerDepartment of Biomolecular Sciences, The Weizmann Institute of Science, Rehovot, Israel.
Iván Muñoz-GutiérrezDepartment of Biomolecular Sciences, The Weizmann Institute of Science, Rehovot, Israel. ivan.munoz.gutierrez@gmail.com.ORCID 0000-0002-9307-5073
Qingdao Institute of Bioenergy and Bioprocess Technology · CNTel Aviv University · ILGuizhou Minzu University · CNTechnion – Israel Institute of Technology · ILWeizmann Institute of Science · IL

Funding

Israel Science Foundation (ISF) 1349/13Israel Science Foundation (ISF) 177/14Israel Science Foundation (ISF) 24/11National Natural Science Foundation of China (National Science Foundation of China) 31661143023
6 · The paper itself

Abstract

Bacteria can adjust their genetic programs via alternative σ factors to face new environmental pressures. Here, we analyzed a unique set of paralogous alternative σ factors, termed σ

Indexed as

Bacterial ProteinsBiomassClostridiumComputational BiologyGene Expression Regulation, BacterialMutagenesis, Site-DirectedPromoter Regions, GeneticSigma FactorBacterial ProteinsSigma Factor

Identifiers

PMID30038431
PMCPMC6056542
OpenAlexW2884113709

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.