Evidence map›Paper›PMID 30038396›Full record

SynthesisNature genetics2018

Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.

James J Lee, Robbee Wedow, Aysu Okbay, Edward Kong, Omeed Maghzian, Meghan Zacher, Tuan Anh Nguyen-Viet, Peter Bowers, Julia Sidorenko, Richard Karlsson Linnér and 70 more

Abstract readMeta-Analysis
In one paragraph

Synthesis in Nature genetics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1,319 papers, 10 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
1,319citing papers in PubMed, 10 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1,319 citing papers in PubMed, 10 syntheses or guidelines pooled it.

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  9. International journal of molecular sciences · 2025
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1,259 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

80 authors.

James J LeeDepartment of Psychology, University of Minnesota Twin Cities, Minneapolis, MN, USA.ORCID http://orcid.org/0000-0001-6547-5128
Robbee WedowDepartment of Sociology, University of Colorado Boulder, Boulder, CO, USA.ORCID http://orcid.org/0000-0002-3108-7087
Aysu OkbayDepartment of Complex Trait Genetics, Center for Neurogenomics and Cognitive Research, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands. a.okbay@vu.nl.ORCID http://orcid.org/0000-0002-5170-7781
Edward KongDepartment of Economics, Harvard University, Cambridge, MA, USA.
Omeed MaghzianDepartment of Economics, Harvard University, Cambridge, MA, USA.
Meghan ZacherDepartment of Sociology, Harvard University, Cambridge, MA, USA.
Tuan Anh Nguyen-VietCenter for Economic and Social Research, University of Southern California, Los Angeles, CA, USA.
Peter BowersDepartment of Economics, Harvard University, Cambridge, MA, USA.
Julia SidorenkoInstitute for Molecular Bioscience, University of Queensland, Brisbane, Queensland, Australia.
Richard Karlsson LinnérDepartment of Complex Trait Genetics, Center for Neurogenomics and Cognitive Research, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands.
Mark Alan FontanaCenter for Economic and Social Research, University of Southern California, Los Angeles, CA, USA.
Tushar KunduCenter for Economic and Social Research, University of Southern California, Los Angeles, CA, USA.
Chanwook LeeDepartment of Economics, Harvard University, Cambridge, MA, USA.
Hui LiDepartment of Economics, Harvard University, Cambridge, MA, USA.
Ruoxi LiCenter for Economic and Social Research, University of Southern California, Los Angeles, CA, USA.
Rebecca RoyerCenter for Economic and Social Research, University of Southern California, Los Angeles, CA, USA.
Pascal N TimshelThe Novo Nordisk Foundation Center for Basic Metabolic Research, Section of Metabolic Genetics, University of Copenhagen, Faculty of Health and Medical Sciences, Copenhagen, Denmark.
Raymond K WaltersAnalytic and Translational Genetics Unit, Massachusetts General Hospital, Boston, MA, USA.ORCID http://orcid.org/0000-0001-8422-6530
Emily A WilloughbyDepartment of Psychology, University of Minnesota Twin Cities, Minneapolis, MN, USA.
Loïc YengoInstitute for Molecular Bioscience, University of Queensland, Brisbane, Queensland, Australia.
23andMe Research Team
COGENT (Cognitive Genomics Consortium)
Social Science Genetic Association Consortium
Maris AlverEstonian Genome Center, University of Tartu, Tartu, Estonia.
Yanchun BaoInstitute for Social and Economic Research, University of Essex, Colchester, UK.
David W ClarkCentre for Global Health Research, Usher Institute of Population Health Sciences and Informatics, University of Edinburgh, Edinburgh, UK.
Felix R DayMRC Epidemiology Unit, Institute of Metabolic Science, University of Cambridge, Cambridge, UK.ORCID http://orcid.org/0000-0003-3789-7651
Nicholas A Furlotte23andMe, Inc., Mountain View, CA, USA.
Peter K JoshiCentre for Global Health Research, Usher Institute of Population Health Sciences and Informatics, University of Edinburgh, Edinburgh, UK.ORCID http://orcid.org/0000-0002-6361-5059
Kathryn E KemperInstitute for Molecular Bioscience, University of Queensland, Brisbane, Queensland, Australia.ORCID http://orcid.org/0000-0002-9288-4522
Aaron Kleinman23andMe, Inc., Mountain View, CA, USA.
Claudia LangenbergMRC Epidemiology Unit, Institute of Metabolic Science, University of Cambridge, Cambridge, UK.
Reedik MägiEstonian Genome Center, University of Tartu, Tartu, Estonia.
Joey W TrampushBrainWorkup, LLC, Santa Monica, CA, USA.ORCID http://orcid.org/0000-0003-0830-508X
Shefali Setia VermaDepartment of Biomedical and Translational Informatics, Geisinger Health System, Danville, PA, USA.
Yang WuInstitute for Molecular Bioscience, University of Queensland, Brisbane, Queensland, Australia.ORCID http://orcid.org/0000-0002-0128-7280
Max LamInstitute of Mental Health, Singapore, Singapore.
Jing Hua ZhaoMRC Epidemiology Unit, Institute of Metabolic Science, University of Cambridge, Cambridge, UK.
Zhili ZhengInstitute for Molecular Bioscience, University of Queensland, Brisbane, Queensland, Australia.
Jason D BoardmanDepartment of Sociology, University of Colorado Boulder, Boulder, CO, USA.
Harry CampbellCentre for Global Health Research, Usher Institute of Population Health Sciences and Informatics, University of Edinburgh, Edinburgh, UK.
Jeremy FreeseDepartment of Sociology, Stanford University, Stanford, CA, USA.
Kathleen Mullan HarrisDepartment of Sociology, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Caroline HaywardMRC Human Genetics Unit, Institute of Genetics and Molecular Medicine, University of Edinburgh, Edinburgh, UK.ORCID http://orcid.org/0000-0002-9405-9550
Pamela HerdInstitute for Social and Economic Research, University of Essex, Colchester, UK.
Meena KumariInstitute for Social and Economic Research, University of Essex, Colchester, UK.
Todd LenczDepartments of Psychiatry and Molecular Medicine, Hofstra Northwell School of Medicine, Hempstead, NY, USA.
Jian'an LuanMRC Epidemiology Unit, Institute of Metabolic Science, University of Cambridge, Cambridge, UK.
Anil K MalhotraDepartments of Psychiatry and Molecular Medicine, Hofstra Northwell School of Medicine, Hempstead, NY, USA.
Andres MetspaluEstonian Genome Center, University of Tartu, Tartu, Estonia.
Lili MilaniEstonian Genome Center, University of Tartu, Tartu, Estonia.ORCID http://orcid.org/0000-0002-5323-3102
Ken K OngMRC Epidemiology Unit, Institute of Metabolic Science, University of Cambridge, Cambridge, UK.ORCID http://orcid.org/0000-0003-4689-7530
John R B PerryMRC Epidemiology Unit, Institute of Metabolic Science, University of Cambridge, Cambridge, UK.
David J PorteousCentre for Genomic and Experimental Medicine, Institute of Genetics and Molecular Medicine, University of Edinburgh, Edinburgh, UK.
Marylyn D RitchieDepartment of Biomedical and Translational Informatics, Geisinger Health System, Danville, PA, USA.ORCID http://orcid.org/0000-0002-1208-1720
Melissa C SmartCentre for Global Health Research, Usher Institute of Population Health Sciences and Informatics, University of Edinburgh, Edinburgh, UK.
Blair H SmithDivision of Population Health Sciences, Ninewells Hospital and Medical School, University of Dundee, Dundee, UK.ORCID http://orcid.org/0000-0002-5362-9430
Joyce Y Tung23andMe, Inc., Mountain View, CA, USA.
Nicholas J WarehamMRC Epidemiology Unit, Institute of Metabolic Science, University of Cambridge, Cambridge, UK.
James F WilsonCentre for Global Health Research, Usher Institute of Population Health Sciences and Informatics, University of Edinburgh, Edinburgh, UK.ORCID http://orcid.org/0000-0001-5751-9178
Jonathan P BeauchampDepartment of Economics, University of Toronto, Toronto, Ontario, Canada.ORCID http://orcid.org/0000-0002-4935-4016
Dalton C ConleyDepartment of Sociology, Princeton University, Princeton, NJ, USA.
Tõnu EskoEstonian Genome Center, University of Tartu, Tartu, Estonia.
Steven F LehrerSchool of Policy Studies, Queen's University, Kingston, Ontario, Canada.
Patrik K E MagnussonDepartment of Medical Epidemiology and Biostatistics, Karolinska Institutet, Stockholm, Sweden.ORCID http://orcid.org/0000-0002-7315-7899
Sven OskarssonDepartment of Government, Uppsala University, Uppsala, Sweden.
Tune H PersThe Novo Nordisk Foundation Center for Basic Metabolic Research, Section of Metabolic Genetics, University of Copenhagen, Faculty of Health and Medical Sciences, Copenhagen, Denmark.
Matthew R RobinsonInstitute for Molecular Bioscience, University of Queensland, Brisbane, Queensland, Australia.
Kevin ThomDepartment of Economics, New York University, New York, NY, USA.
Chelsea WatsonCenter for Economic and Social Research, University of Southern California, Los Angeles, CA, USA.
Christopher F ChabrisAutism and Developmental Medicine Institute, Geisinger Health System, Lewisburg, PA, USA.
Michelle N MeyerCenter for Translational Bioethics and Health Care Policy, Geisinger Health System, Danville, PA, USA.
David I LaibsonDepartment of Economics, Harvard University, Cambridge, MA, USA.
Jian YangInstitute for Molecular Bioscience, University of Queensland, Brisbane, Queensland, Australia.ORCID http://orcid.org/0000-0003-2001-2474
Magnus JohannessonDepartment of Economics, Stockholm School of Economics, Stockholm, Sweden.ORCID http://orcid.org/0000-0001-8759-6393
Philipp D KoellingerDepartment of Complex Trait Genetics, Center for Neurogenomics and Cognitive Research, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands.
Patrick TurleyAnalytic and Translational Genetics Unit, Massachusetts General Hospital, Boston, MA, USA.
Peter M VisscherInstitute for Molecular Bioscience, University of Queensland, Brisbane, Queensland, Australia. peter.visscher@uq.edu.au.ORCID http://orcid.org/0000-0002-2143-8760
Daniel J BenjaminCenter for Economic and Social Research, University of Southern California, Los Angeles, CA, USA. daniel.benjamin@gmail.com.ORCID http://orcid.org/0000-0002-2642-5416
David CesariniNational Bureau of Economic Research, Cambridge, MA, USA.

Funding

Understanding and Improving Healthcare Decision-Making and Outcomes for People Living with Alzheimer's Disease and Related DementiasP01AG005842 · NIA · NATIONAL BUREAU OF ECONOMIC RESEARCH · PI KOSALI ILAYPERUMA SIMON · 1986 to 2026
$56.5M
SUPPLEMENT TO RUSH ALZHEIMERS DISEASE CENTER COREP30AG010161 · NIA · RUSH UNIVERSITY MEDICAL CENTER · PI LEURGANS, SUE E. · 1991 to 2020
$49.1M
NBER Center for Aging and Health Research-Post COVID-19 Experiences Among Adults with ADRDP30AG012810 · NIA · NATIONAL BUREAU OF ECONOMIC RESEARCH · PI DAVID M CUTLER · 1999 to 2026
$24.6M
RISK FACTORS, PATHOLOGY, AND CLINICAL EXPRESSIONS OF ADR01AG015819 · NIA · RUSH UNIVERSITY MEDICAL CENTER · PI BENNETT, DAVID ALAN · 1998 to 2024
$21.4M
NBER Training Program in Aging and Health EconomicsT32AG000186 · NIA · NATIONAL BUREAU OF ECONOMIC RESEARCH · PI CUTLER, DAVID M, FINKELSTEIN, AMY N. · 1989 to 2024
$9.6M
Research Services CoreP2CHD050924 · NICHD · UNIV OF NORTH CAROLINA CHAPEL HILL · PI KAREN B GUZZO · 2015 to 2026
$9.6M
University of Colorado Population CenterP2CHD066613 · NICHD · UNIVERSITY OF COLORADO · PI JANE A MENKEN · 2015 to 2026
$3.7M
Add Health: A Genotype and Phenotype Resource for the Global Scientific CommunityR01HD073342 · NICHD · UNIV OF NORTH CAROLINA CHAPEL HILL · PI HARRIS, KATHLEEN MULLAN · 2012 to 2016
$3.6M
Genome-Wide Analyses of Health and Well-Being PhenotypesR01AG042568 · NIA · UNIVERSITY OF SOUTHERN CALIFORNIA · PI BENJAMIN, DANIEL J · 2015 to 2021
$2.8M
Scientific and Technical Computing CoreP2CHD047879 · NICHD · PRINCETON UNIVERSITY · PI SALGANIK, MATTHEW J. · 2014 to 2018
$2.0M
Characterizing disparities in late-onset Alzheimer's disease risk through polygenic risk and epidemiologic factors in the Health and Retirement SurveyR01AG055406 · NIA · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI BAKULSKI, KELLY, WARE, ERIN BAKSHIS · 2017 to 2020
$1.7M
Biotechnology and Biological Sciences Research Council BB/F019394/1Biotechnology and Biological Sciences Research Council BB/F022441/1European Research Council 647648Medical Research Council G0100594Medical Research Council G0600237Medical Research Council G0901461Medical Research Council G1001799Medical Research Council MC_UU_00007/10Medical Research Council MC_UU_12013/4Medical Research Council MC_UU_12015/1Medical Research Council MC_UU_12015/2Medical Research Council MR/K026992/1Medical Research Council MR/N01104X/2NIA NIH HHS P01 AG005842NIA NIH HHS P30 AG010161NIA NIH HHS P30 AG012810NIA NIH HHS R01 AG015819NIA NIH HHS R01 AG042568NIA NIH HHS R01 AG055406NIA NIH HHS T32 AG000186NICHD NIH HHS P2C HD047879NICHD NIH HHS P2C HD050924NICHD NIH HHS P2C HD066613NICHD NIH HHS R01 HD073342NIMH NIH HHS L30 MH104879Wellcome Trust
6 · The paper itself

Abstract

Here we conducted a large-scale genetic association analysis of educational attainment in a sample of approximately 1.1 million individuals and identify 1,271 independent genome-wide-significant SNPs. For the SNPs taken together, we found evidence of heterogeneous effects across environments. The SNPs implicate genes involved in brain-development processes and neuron-to-neuron communication. In a separate analysis of the X chromosome, we identify 10 independent genome-wide-significant SNPs and estimate a SNP heritability of around 0.3% in both men and women, consistent with partial dosage compensation. A joint (multi-phenotype) analysis of educational attainment and three related cognitive phenotypes generates polygenic scores that explain 11-13% of the variance in educational attainment and 7-10% of the variance in cognitive performance. This prediction accuracy substantially increases the utility of polygenic scores as tools in research.

Indexed as

Multifactorial InheritanceAdultAgedAged, 80 and overCohort StudiesEducational StatusFemaleGenome-Wide Association StudyHumansMaleMiddle AgedPhenotypePolymorphism, Single Nucleotide

Identifiers

PMID30038396
PMCPMC6393768

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.