Evidence map›Paper›PMID 30038310›Full record

ArticleNature microbiology2018

Murine colitis reveals a disease-associated bacteriophage community.

Breck A Duerkop, Manuel Kleiner, David Paez-Espino, Wenhan Zhu, Brian Bushnell, Brian Hassell, Sebastian E Winter, Nikos C Kyrpides, Lora V Hooper

Open access · greenAbstract read
In one paragraph

Article in Nature microbiology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 110 papers.

0numbers the graph read from it
0cells of the map it votes in
110citing papers in PubMed
18.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

110 citing papers in PubMed, 170 citations in OpenAlex.

  1. Review
  2. Article
  3. Beyond the Stomach: Exploring the Role ofExpert reviews in molecular medicine · 2026
    Review
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  5. Review
  6. Review
  7. Review
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  10. Review
  11. Article
  12. Review
  13. Review
  14. Article
  15. A Novel Bacteriophage with the Potential to InhibitAntibiotics (Basel, Switzerland) · 2025
    Article
  16. Article
  17. Article
  18. Article
  19. Human Gut Bacteriophageome: Insights Into Drug Resistance Mechanisms in Tuberculosis.Interdisciplinary perspectives on infectious diseases · 2025
    Review
  20. Review

50 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 1 country.

Breck A DuerkopDepartment of Immunology and Microbiology, University of Colorado School of Medicine, Aurora, CO, USA. breck.duerkop@ucdenver.edu.ORCID http://orcid.org/0000-0003-4030-9822
Manuel KleinerDepartment of Plant and Microbial Biology, North Carolina State University, Raleigh, NC, USA. manuel_kleiner@ncsu.edu.ORCID http://orcid.org/0000-0001-6904-0287
David Paez-EspinoDepartment of Energy, Joint Genome Institute, Walnut Creek, CA, USA.ORCID http://orcid.org/0000-0002-2939-5398
Wenhan ZhuDepartment of Microbiology, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Brian BushnellDepartment of Energy, Joint Genome Institute, Walnut Creek, CA, USA.
Brian HassellDepartment of Immunology, University of Texas Southwestern Medical Center, Dallas, TX, USA.ORCID http://orcid.org/0000-0002-0031-2173
Sebastian E WinterDepartment of Microbiology, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Nikos C KyrpidesDepartment of Energy, Joint Genome Institute, Walnut Creek, CA, USA.
Lora V HooperDepartment of Immunology, University of Texas Southwestern Medical Center, Dallas, TX, USA. lora.hooper@utsouthwestern.edu.ORCID http://orcid.org/0000-0002-2759-4641
Joint Genome Institute · USThe University of Texas Southwestern Medical Center · USHoward Hughes Medical Institute · USNorth Carolina State University · USUniversity of Colorado Denver · US

Funding

Microbial Regulation of Retinol Transport and its Role in Intestinal ImmunityR01DK070855 · NIDDK · UT SOUTHWESTERN MEDICAL CENTER · PI LORA V HOOPER · 2005 to 2026
$7.9M
The contribution of bacteriophages to host-microbe interactions in the intestineK01DK102436 · NIDDK · UT SOUTHWESTERN MEDICAL CENTER · PI DUERKOP, BRECK A · 2014 to 2018
$581k
NIDDK NIH HHS K01 DK102436NIDDK NIH HHS R01 DK070855
6 · The paper itself

Abstract

The dysregulation of intestinal microbial communities is associated with inflammatory bowel diseases (IBD). Studies aimed at understanding the contribution of the microbiota to inflammatory diseases have primarily focused on bacteria, yet the intestine harbours a viral component dominated by prokaryotic viruses known as bacteriophages (phages). Phage numbers are elevated at the intestinal mucosal surface and phages increase in abundance during IBD, suggesting that phages play an unidentified role in IBD. We used a sequence-independent approach for the selection of viral contigs and then applied quantitative metagenomics to study intestinal phages in a mouse model of colitis. We discovered that during colitis the intestinal phage population is altered and transitions from an ordered state to a stochastic dysbiosis. We identified phages specific to pathobiotic hosts associated with intestinal disease, whose abundances are altered during colitis. Additionally, phage populations in healthy and diseased mice overlapped with phages from healthy humans and humans with IBD. Our findings indicate that intestinal phage communities are altered during inflammatory disease, establishing a platform for investigating phage involvement in IBD.

Indexed as

AnimalsBacteriophagesCells, CulturedColitisDisease Models, AnimalDysbiosisGastrointestinal MicrobiomeGenome, ViralHumansIntestinal MucosaMaleMiceMice, Inbred C57BLMice, Knockout

Identifiers

PMID30038310
PMCPMC6112176
OpenAlexW2883885053

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.