Evidence map›Paper›PMID 30038246›Full record

ArticleNature ecology & evolution2018

Gene exchange drives the ecological success of a multi-host bacterial pathogen.

Emily J Richardson, Rodrigo Bacigalupe, Ewan M Harrison, Lucy A Weinert, Samantha Lycett, Manouk Vrieling, Kirsty Robb, Paul A Hoskisson, Matthew T G Holden, Edward J Feil and 10 more

Abstract read
In one paragraph

Article in Nature ecology & evolution, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 151 papers.

0numbers the graph read from it
0cells of the map it votes in
151citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

151 citing papers in PubMed.

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  19. Characterization ofAntibiotics (Basel, Switzerland) · 2025
    Article
  20. Article

91 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors.

Emily J RichardsonThe Roslin Institute, Royal (Dick) School of Veterinary Studies, University of Edinburgh, Edinburgh, UK.
Rodrigo BacigalupeThe Roslin Institute, Royal (Dick) School of Veterinary Studies, University of Edinburgh, Edinburgh, UK.
Ewan M HarrisonDepartment of Medicine, University of Cambridge, Cambridge, UK.
Lucy A WeinertDepartment of Veterinary Medicine, University of Cambridge, Cambridge, UK.
Samantha LycettThe Roslin Institute, Royal (Dick) School of Veterinary Studies, University of Edinburgh, Edinburgh, UK.ORCID http://orcid.org/0000-0003-3159-596X
Manouk VrielingThe Roslin Institute, Royal (Dick) School of Veterinary Studies, University of Edinburgh, Edinburgh, UK.
Kirsty RobbUniversity of Strathclyde, Glasgow, UK.
Paul A HoskissonUniversity of Strathclyde, Glasgow, UK.ORCID http://orcid.org/0000-0003-4332-1640
Matthew T G HoldenSchool of Medicine, University of St Andrews, St Andrews, UK.ORCID http://orcid.org/0000-0002-4958-2166
Edward J FeilMilner Centre for Evolution, University of Bath, Bath, UK.
Gavin K PatersonRoyal (Dick) School of Veterinary Studies, University of Edinburgh, Edinburgh, UK.
Steven Y C TongVictorian Infectious Disease Service, The Royal Melbourne Hospital and The University of Melbourne at the Peter Doherty Institute for Infection and Immunity, Melbourne, Australia.
Adebayo ShittuDepartment of Microbiology, Obafemi Awolowo University, Ile-Ife, Nigeria.
Willem van WamelDepartment of Medical Microbiology and Infectious Diseases, Erasmus MC, Rotterdam, The Netherlands.
David M AanensenCentre for Genomic Pathogen Surveillance, Hinxton, UK.
Julian ParkhillWellcome Trust Sanger Institute, Hinxton, UK.ORCID http://orcid.org/0000-0002-7069-5958
Sharon J PeacockLondon School of Hygiene and Tropical Medicine, London, UK.
Jukka CoranderWellcome Trust Sanger Institute, Hinxton, UK.
Mark HolmesDepartment of Veterinary Medicine, University of Cambridge, Cambridge, UK.
J Ross FitzgeraldThe Roslin Institute, Royal (Dick) School of Veterinary Studies, University of Edinburgh, Edinburgh, UK. Ross.Fitzgerald@ed.ac.uk.ORCID http://orcid.org/0000-0002-9233-8468

Funding

Biotechnology and Biological Sciences Research Council BB/I013873/1Medical Research Council G1000803Medical Research Council G1001787Medical Research Council MR/N02995X/1Medical Research Council MR/P007201/1Medical Research Council MR/S00291X/1Wellcome Trust 098600Wellcome Trust 109385Wellcome Trust 201531
6 · The paper itself

Abstract

The capacity for some pathogens to jump into different host-species populations is a major threat to public health and food security. Staphylococcus aureus is a multi-host bacterial pathogen responsible for important human and livestock diseases. Here, using a population-genomic approach, we identify humans as a major hub for ancient and recent S. aureus host-switching events linked to the emergence of endemic livestock strains, and cows as the main animal reservoir for the emergence of human epidemic clones. Such host-species transitions are associated with horizontal acquisition of genetic elements from host-specific gene pools conferring traits required for survival in the new host-niche. Importantly, genes associated with antimicrobial resistance are unevenly distributed among human and animal hosts, reflecting distinct antibiotic usage practices in medicine and agriculture. In addition to gene acquisition, genetic diversification has occurred in pathways associated with nutrient acquisition, implying metabolic remodelling after a host switch in response to distinct nutrient availability. For example, S. aureus from dairy cattle exhibit enhanced utilization of lactose-a major source of carbohydrate in bovine milk. Overall, our findings highlight the influence of human activities on the multi-host ecology of a major bacterial pathogen, underpinned by horizontal gene transfer and core genome diversification.

Indexed as

Host-Pathogen InteractionsAnimalsCattleEvolution, MolecularGenes, BacterialGene Transfer, HorizontalGenome, BacterialGenome-Wide Association StudyHumansLivestockPhylogenyPseudogenesStaphylococcal InfectionsStaphylococcus aureus

Identifiers

PMID30038246
PMCPMC7610605

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.