Evidence map›Paper›PMID 30038016›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2018

Switching of the folding-energy landscape governs the allosteric activation of protein kinase A.

Jeneffer P England, Yuxin Hao, Lihui Bai, Virginia Glick, H Courtney Hodges, Susan S Taylor, Rodrigo A Maillard

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
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  6. Detecting Förster resonance energy transfer in living cells by conventional and spectral flow cytometry.Cytometry. Part A : the journal of the International Society for Analytical Cytology · 2022
    Article
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  11. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Jeneffer P EnglandDepartment of Chemistry, Georgetown University, Washington, DC 20057.
Yuxin HaoDepartment of Chemistry, Georgetown University, Washington, DC 20057.
Lihui BaiDepartment of Chemistry, Georgetown University, Washington, DC 20057.
Virginia GlickDepartment of Chemistry, Georgetown University, Washington, DC 20057.
H Courtney HodgesDepartment of Molecular and Cellular Biology, Baylor College of Medicine, Houston, TX 77030.ORCID 0000-0003-4441-497X
Susan S TaylorDepartment of Pharmacology, University of California, San Diego, La Jolla, CA 92093; staylor@ucsd.edu rodrigo.maillard@georgetown.edu.
Rodrigo A MaillardDepartment of Chemistry, Georgetown University, Washington, DC 20057; staylor@ucsd.edu rodrigo.maillard@georgetown.edu.ORCID 0000-0001-5078-6775

Funding

Protein Kinase Regulatory Subunit I Directed MutagenesisR01GM034921 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI TAYLOR, SUSAN S. · 1985 to 2018
$7.2M
Dynamic effects of cancer mutations on the mammalian SWI/SNF ATPase BrgR00CA187565 · NCI · BAYLOR COLLEGE OF MEDICINE · PI HODGES, HAMILTON COURTNEY · 2017 to 2019
$747k
NCI NIH HHS R00 CA187565NIGMS NIH HHS R01 GM034921
6 · The paper itself

Abstract

Protein kinases are dynamic molecular switches that sample multiple conformational states. The regulatory subunit of PKA harbors two cAMP-binding domains [cyclic nucleotide-binding (CNB) domains] that oscillate between inactive and active conformations dependent on cAMP binding. The cooperative binding of cAMP to the CNB domains activates an allosteric interaction network that enables PKA to progress from the inactive to active conformation, unleashing the activity of the catalytic subunit. Despite its importance in the regulation of many biological processes, the molecular mechanism responsible for the observed cooperativity during the activation of PKA remains unclear. Here, we use optical tweezers to probe the folding cooperativity and energetics of domain communication between the cAMP-binding domains in the apo state and bound to the catalytic subunit. Our study provides direct evidence of a switch in the folding-energy landscape of the two CNB domains from energetically independent in the apo state to highly cooperative and energetically coupled in the presence of the catalytic subunit. Moreover, we show that destabilizing mutational effects in one CNB domain efficiently propagate to the other and decrease the folding cooperativity between them. Taken together, our results provide a thermodynamic foundation for the conformational plasticity that enables protein kinases to adapt and respond to signaling molecules.

Indexed as

Protein FoldingAllosteric RegulationCatalytic DomainCyclic AMPCyclic AMP-Dependent Protein KinasesEnzyme AssaysMolecular Dynamics SimulationMutationOptical TweezersProtein BindingProtein DomainsSignal TransductionCyclic AMPCyclic AMP-Dependent Protein KinasesallosterycAMPkinaseoptical tweezerssingle molecule

Identifiers

PMID30038016
PMCPMC6094112

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.