Evidence map›Paper›PMID 30036395›Full record

ArticlePLoS genetics2018

Evolutionary plasticity in the innate immune function of Akirin.

Jolanta Polanowska, Jia-Xuan Chen, Julien Soulé, Shizue Omi, Jerome Belougne, Clara Taffoni, Nathalie Pujol, Matthias Selbach, Olivier Zugasti, Jonathan J Ewbank

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
2.3field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 35 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Ubiquitin-related processes and innate immunity in C. elegans.Cellular and molecular life sciences : CMLS · 2021
    Review
  12. Article
  13. Innate immunity in C. elegans.Current topics in developmental biology · 2021
    Review
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. International journal of molecular sciences · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Jolanta PolanowskaAix Marseille Univ, CNRS, INSERM, CIML, Marseille, France.
Jia-Xuan ChenMax Delbrück Center for Molecular Medicine, Berlin, Germany.ORCID 0000-0002-3671-553X
Julien SouléAix Marseille Univ, CNRS, INSERM, CIML, Marseille, France.
Shizue OmiAix Marseille Univ, CNRS, INSERM, CIML, Marseille, France.
Jerome BelougneAix Marseille Univ, CNRS, INSERM, CIML, Marseille, France.ORCID 0000-0003-1175-8119
Clara TaffoniAix Marseille Univ, CNRS, INSERM, CIML, Marseille, France.
Nathalie PujolAix Marseille Univ, CNRS, INSERM, CIML, Marseille, France.ORCID 0000-0001-8889-3197
Matthias SelbachMax Delbrück Center for Molecular Medicine, Berlin, Germany.
Olivier ZugastiAix Marseille Univ, CNRS, INSERM, CIML, Marseille, France.
Jonathan J EwbankAix Marseille Univ, CNRS, INSERM, CIML, Marseille, France.ORCID 0000-0002-1257-6862
Centre National de la Recherche Scientifique · FRMax Delbrück Center · DE

Funding

Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Ann E. Rougvie · 2012 to 2026
$7.5M
NIH HHS P40 OD010440
6 · The paper itself

Abstract

Eukaryotic gene expression requires the coordinated action of transcription factors, chromatin remodelling complexes and RNA polymerase. The conserved nuclear protein Akirin plays a central role in immune gene expression in insects and mammals, linking the SWI/SNF chromatin-remodelling complex with the transcription factor NFκB. Although nematodes lack NFκB, Akirin is also indispensable for the expression of defence genes in the epidermis of Caenorhabditis elegans following natural fungal infection. Through a combination of reverse genetics and biochemistry, we discovered that in C. elegans Akirin has conserved its role of bridging chromatin-remodellers and transcription factors, but that the identity of its functional partners is different since it forms a physical complex with NuRD proteins and the POU-class transcription factor CEH-18. In addition to providing a substantial step forward in our understanding of innate immune gene regulation in C. elegans, our results give insight into the molecular evolution of lineage-specific signalling pathways.

Indexed as

Evolution, MolecularImmunity, InnateAnimalsAnimals, Genetically ModifiedCaenorhabditis elegansCaenorhabditis elegans ProteinsCell Cycle ProteinsChromatinChromatin Assembly and DisassemblyGene Expression RegulationHomeodomain ProteinsMi-2 Nucleosome Remodeling and Deacetylase ComplexProtein BindingTranscription FactorsAkir-1 protein, C elegansCaenorhabditis elegans ProteinsCell Cycle ProteinsChromatinHomeodomain ProteinsMi-2 Nucleosome Remodeling and Deacetylase ComplexTranscription Factors

Identifiers

PMID30036395
PMCPMC6072134
OpenAlexW2781477221

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.