Evidence map›Paper›PMID 30033364›Full record

ArticleCell2018

Bacteriophage Cooperation Suppresses CRISPR-Cas3 and Cas9 Immunity.

Adair L Borges, Jenny Y Zhang, MaryClare F Rollins, Beatriz A Osuna, Blake Wiedenheft, Joseph Bondy-Denomy

Abstract read
In one paragraph

Article in Cell, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 84 papers.

0numbers the graph read from it
0cells of the map it votes in
84citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

84 citing papers in PubMed.

  1. Revisiting the life cycle of temperate phages.Nature reviews. Microbiology · 2026
    Review
  2. Review
  3. Review
  4. Review
  5. Phage Therapy forAntibiotics (Basel, Switzerland) · 2025
    Review
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Open questions in the social lives of viruses.Journal of evolutionary biology · 2023
    Review
  20. Review

24 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

Adair L BorgesDepartment of Microbiology and Immunology, University of California, San Francisco, San Francisco, CA 94143, USA.
Jenny Y ZhangDepartment of Microbiology and Immunology, University of California, San Francisco, San Francisco, CA 94143, USA.
MaryClare F RollinsDepartment of Microbiology and Immunology, Montana State University, Bozeman, MT 59717, USA.
Beatriz A OsunaDepartment of Microbiology and Immunology, University of California, San Francisco, San Francisco, CA 94143, USA.
Blake WiedenheftDepartment of Microbiology and Immunology, Montana State University, Bozeman, MT 59717, USA.
Joseph Bondy-DenomyDepartment of Microbiology and Immunology, University of California, San Francisco, San Francisco, CA 94143, USA; Quantitative Biosciences Institute, University of California, San Francisco, San Francisco, CA 94143, USA. Electronic address: joseph.bondy-denomy@ucsf.edu.

Funding

Microbial Pathogenesis and Host DefenseT32AI060537 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Joanne N. Engel · 2004 to 2026
$6.5M
Pilot Grants ProgramP30GM110732 · NIGMS · MONTANA STATE UNIVERSITY - BOZEMAN · PI QUINN, MARK T · 2014 to 2018
$5.4M
Center for Zoonotic and Emerging Infectious DiseasesP20GM103500 · NIGMS · MONTANA STATE UNIVERSITY - BOZEMAN · PI QUINN, MARK T · 2012 to 2013
$4.2M
Discovering New Roles for CRISPR-Cas in Bacterial PathogenesisDP5OD021344 · OD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BONDY-DENOMY, JOSEPH · 2015 to 2019
$2.1M
Structure, Function and Application of CRISPR RNA-guided Immunity in BacteriaR01GM108888 · NIGMS · MONTANA STATE UNIVERSITY - BOZEMAN · PI WIEDENHEFT, BLAKE A · 2014 to 2019
$1.6M
Structure and function of CRISPR RNA-guided foreign DNA surveillance systems in P. aeruginosaR01GM110270 · NIGMS · MONTANA STATE UNIVERSITY - BOZEMAN · PI WIEDENHEFT, BLAKE A · 2016 to 2019
$1.2M
CRISPR generated human genome knockout library for understanding Chlamydial pathogenesisR21AI130670 · NIAID · MONTANA STATE UNIVERSITY - BOZEMAN · PI WIEDENHEFT, BLAKE A · 2018 to 2019
$408k
NIAID NIH HHS R21 AI130670NIAID NIH HHS T32 AI060537NIGMS NIH HHS P20 GM103500NIGMS NIH HHS P30 GM110732NIGMS NIH HHS R01 GM108888NIGMS NIH HHS R01 GM110270NIH HHS DP5 OD021344
6 · The paper itself

Abstract

Bacteria utilize CRISPR-Cas adaptive immune systems for protection from bacteriophages (phages), and some phages produce anti-CRISPR (Acr) proteins that inhibit immune function. Despite thorough mechanistic and structural information for some Acr proteins, how they are deployed and utilized by a phage during infection is unknown. Here, we show that Acr production does not guarantee phage replication when faced with CRISPR-Cas immunity, but instead, infections fail when phage population numbers fall below a critical threshold. Infections succeed only if a sufficient Acr dose is contributed to a single cell by multiple phage genomes. The production of Acr proteins by phage genomes that fail to replicate leave the cell immunosuppressed, which predisposes the cell for successful infection by other phages in the population. This altruistic mechanism for CRISPR-Cas inhibition demonstrates inter-virus cooperation that may also manifest in other host-parasite interactions.

Indexed as

BacteriophagesCRISPR-Cas SystemsEvolution, MolecularHost-Pathogen InteractionsPseudomonas aeruginosaViral ProteinsViral Proteinsaltruismanti-CRISPRbacteriophagecooperationCRISPR-Cas9CRISPR-Cas immunityhost-pathogen interactionPseudomonas aeruginosavirus

Identifiers

PMID30033364
PMCPMC6086726

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.