Evidence map›Paper›PMID 30032195›Full record

ArticleNucleic acids research2018

Structure of the bifunctional cryptochrome aCRY from Chlamydomonas reinhardtii.

Sophie Franz, Elisabeth Ignatz, Sandra Wenzel, Hannah Zielosko, Eka Putra Gusti Ngurah Putu, Manuel Maestre-Reyna, Ming-Daw Tsai, Junpei Yamamoto, Maria Mittag, Lars-Oliver Essen

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
10.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 69 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Sensing a rainbow of colors: algal photoreceptors.Frontiers in plant science · 2025
    Review
  5. Dynamics and mechanism of DNA repair by a bifunctional cryptochrome.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  6. Article
  7. A structural decryption of cryptochromes.Frontiers in chemistry · 2024
    Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. A polyyne toxin produced by an antagonistic bacterium blinds and lyses a Chlamydomonad alga.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  18. Key interactions with deazariboflavin cofactor for light-driven energy transfer in Xenopus (6-4) photolyase.Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology · 2021
    Article
  19. Diel transcriptional oscillations of light-sensitive regulatory elements in open-ocean eukaryotic plankton communities.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 3 countries.

Sophie FranzUnit for Structural Biochemistry, Department of Chemistry, Philipps University Marburg, Hans-Meerwein Straße 4, 35032 Marburg, Germany.
Elisabeth IgnatzUnit for Structural Biochemistry, Department of Chemistry, Philipps University Marburg, Hans-Meerwein Straße 4, 35032 Marburg, Germany.
Sandra WenzelMatthias Schleiden Institute of Genetics, Bioinformatics and Molecular Botany, Friedrich Schiller University, Am Planetarium 1, 07743 Jena, Germany.
Hannah ZieloskoUnit for Structural Biochemistry, Department of Chemistry, Philipps University Marburg, Hans-Meerwein Straße 4, 35032 Marburg, Germany.
Eka Putra Gusti Ngurah PutuInstitute of Biological Chemistry, Academia Sinica, 128 Academia Rd. Sec. 2, Taipei 115, Taiwan.
Manuel Maestre-ReynaInstitute of Biological Chemistry, Academia Sinica, 128 Academia Rd. Sec. 2, Taipei 115, Taiwan.
Ming-Daw TsaiInstitute of Biological Chemistry, Academia Sinica, 128 Academia Rd. Sec. 2, Taipei 115, Taiwan.
Junpei YamamotoDivision of Chemistry, Graduate School of Engineering Science, Osaka University, 1-3 Machikaneyama, Toyonaka, Osaka 560-8531, Japan.
Maria MittagMatthias Schleiden Institute of Genetics, Bioinformatics and Molecular Botany, Friedrich Schiller University, Am Planetarium 1, 07743 Jena, Germany.
Lars-Oliver EssenUnit for Structural Biochemistry, Department of Chemistry, Philipps University Marburg, Hans-Meerwein Straße 4, 35032 Marburg, Germany.
Philipps University of Marburg · DEInstitute of Biological Chemistry, Academia Sinica · TWFriedrich Schiller University Jena · DEThe University of Osaka · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Photolyases and cryptochromes form an almost ubiquitous family of blue light photoreceptors involved in the repair and maintenance of DNA integrity or regulatory control. We found that one cryptochrome from the green alga Chlamydomonas reinhardtii (CraCRY) is capable of both, control of transcript levels and the sexual cycle of the alga in a positive (germination) and negative manner (mating ability), as well as catalyzing the repair of UV-DNA lesions. Its 1.6 Å crystal structure shows besides the FAD chromophore an aromatic tetrad that is indispensable in animal-like type I cryptochromes for light-driven change of their signaling-active redox state and formation of a stable radical pair. Given CraCRY's catalytic activity as (6-4) photolyase in vivo and in vitro, we present the first co-crystal structure of a cryptochrome with duplex DNA comprising a (6-4) pyrimidine-pyrimidone lesion. This 2.9 Å structure reveals a distinct conformation for the catalytic histidine His1, H357, that challenges previous models of a single-photon driven (6-4) photolyase mechanism.

Indexed as

Molecular ConformationAmino Acid SequenceChlamydomonas reinhardtiiCryptochromesCrystallography, X-RayDeoxyribodipyrimidine Photo-LyaseDNA RepairModels, MolecularOxidation-ReductionSequence AlignmentSignal TransductionCryptochromesDeoxyribodipyrimidine Photo-Lyase

Identifiers

PMID30032195
PMCPMC6125616
OpenAlexW2884649540

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.