Evidence map›Paper›PMID 30031967›Full record

ArticleStem cell research2018

Genomic functions of developmental pluripotency associated factor 4 (Dppa4) in pluripotent stem cells and cancer.

Rachel Herndon Klein, Po-Yuan Tung, Priyanka Somanath, Hans Joerg Fehling, Paul S Knoepfler

Open access · goldAbstract read
In one paragraph

Article in Stem cell research, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 19 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Rachel Herndon KleinDepartment of Cell Biology and Human Anatomy, University of California, Davis, 1 Shields Ave, Davis, CA 95616, United States.; Institute of Pediatric Regenerative Medicine, Shriners Hospitals for Children Northern California, Sacramento, CA 95817, United States.
Po-Yuan TungDepartment of Cell Biology and Human Anatomy, University of California, Davis, 1 Shields Ave, Davis, CA 95616, United States.; Institute of Pediatric Regenerative Medicine, Shriners Hospitals for Children Northern California, Sacramento, CA 95817, United States.
Priyanka SomanathDepartment of Cell Biology and Human Anatomy, University of California, Davis, 1 Shields Ave, Davis, CA 95616, United States.; Institute of Pediatric Regenerative Medicine, Shriners Hospitals for Children Northern California, Sacramento, CA 95817, United States.
Hans Joerg FehlingInstitute of Immunology, University Hospital, Ulm, Germany.
Paul S KnoepflerDepartment of Cell Biology and Human Anatomy, University of California, Davis, 1 Shields Ave, Davis, CA 95616, United States.; Institute of Pediatric Regenerative Medicine, Shriners Hospitals for Children Northern California, Sacramento, CA 95817, United States. Electronic address: knoepfler@ucdavis.edu.
Shriners Hospitals for Children - Erie · USUniversity Hospital Ulm · DE

Funding

Myc Regulation of Embryonic Stem Cell Self-Renewal and PluripotencyR01GM100782 · NIGMS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI KNOEPFLER, PAUL S · 2011 to 2015
$1.4M
Targeting a Novel H3.3 Epigenetic Switch to Regulate Health and DiseaseR01GM116919 · NIGMS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI KNOEPFLER, PAUL S · 2016 to 2019
$1.4M
NIGMS NIH HHS R01 GM100782NIGMS NIH HHS R01 GM116919
6 · The paper itself

Abstract

Developmental pluripotency associated factor 4 (Dppa4) is a highly specific marker of pluripotent cells, and is also overexpressed in certain cancers, but its function in either of these contexts is poorly understood. In this study, we use ChIP-Seq to identify Dppa4 binding genome-wide in three distinct cell types: mouse embryonic stem cells (mESC), embryonal carcinoma cells, and 3T3 fibroblasts ectopically expressing Dppa4. We find a core set of Dppa4 binding sites shared across cell types, and also a substantial number of sites unique to each cell type. Across cell types Dppa4 shows a preference for binding to regions with active chromatin signatures, and can influence chromatin modifications at target genes. In 3T3 fibroblasts with enforced Dppa4 expression, Dppa4 represses the cell cycle inhibitor Cdkn2c and activates Ets family transcription factor Etv4, leading to alterations in the cell cycle that likely contribute to the oncogenic phenotype. Dppa4 also directly regulates Etv4 in mESC but represses it in this context, and binds with Oct4 to a set of shared targets that are largely independent of Sox2 and Nanog, indicating that Dppa4 functions independently of the core pluripotency network in stem cells. Together these data provide novel insights into Dppa4 function in both pluripotent and oncogenic contexts.

Indexed as

3T3 CellsAdenovirus E1A ProteinsAnimalsCell ProliferationChromatinCyclin-Dependent Kinase Inhibitor p18Embryonal Carcinoma Stem CellsGene Expression RegulationGenomicsHumansMiceNuclear ProteinsPluripotent Stem CellsProto-Oncogene ProteinsProto-Oncogene Proteins c-etsTransfectionAdenovirus E1A ProteinsChromatinCyclin-Dependent Kinase Inhibitor p18DPPA4 protein, humanDppa4 protein, mouseETV4 protein, humanEtv4 protein, mouseNuclear ProteinsProto-Oncogene ProteinsProto-Oncogene Proteins c-etsCell cycleChromatinDppa4Histone deacetylaseOct4OncogenePluripotent stem cells

Identifiers

PMID30031967
PMCPMC6133722
OpenAlexW2884415990

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.