Evidence map›Paper›PMID 30030436›Full record

ArticleNature communications2018

Recurrent homozygous deletion of DROSHA and microduplication of PDE4DIP in pineoblastoma.

Matija Snuderl, Kasthuri Kannan, Elke Pfaff, Shiyang Wang, James M Stafford, Jonathan Serrano, Adriana Heguy, Karina Ray, Arline Faustin, Olga Aminova and 19 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
2.6field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 75 citations in OpenAlex.

  1. Trial
  2. Trial
  3. Article
  4. Histopathology and Molecular Pathology of Pineal Region Tumors.Advances and technical standards in neurosurgery · 2026
    Review
  5. Article
  6. Cancers · 2025
    Review
  7. Article
  8. Article
  9. Article
  10. Germline Pathogenic DROSHA Variants Are Linked to Pineoblastoma and Wilms Tumor Predisposition.Clinical cancer research : an official journal of the American Association for Cancer Research · 2025
    Article
  11. Review
  12. Article
  13. Review
  14. Review
  15. Pineal/germ cell tumors and pineal parenchymal tumors.Child's nervous system : ChNS : official journal of the International Society for Pediatric Neurosurgery · 2023
    Review
  16. Histopathology and molecular pathology of pediatric pineal parenchymal tumors.Child's nervous system : ChNS : official journal of the International Society for Pediatric Neurosurgery · 2023
    Review
  17. Review
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

29 authors at 6 institutions in 2 countries.

Matija SnuderlDivision of Neuropathology, NYU Langone Health, New York, 10016, NY, USA.
Kasthuri KannanDivision of Neuropathology, NYU Langone Health, New York, 10016, NY, USA.ORCID http://orcid.org/0000-0002-8479-0657
Elke PfaffHopp Children's Cancer Center at the NCT Heidelberg (KiTZ), Heidelberg, 69120, Germany.
Shiyang WangDivision of Pediatric Hematology/Oncology, NYU Langone Health, New York, 10016, NY, USA.
James M StaffordDepartment of Biochemistry and Molecular Pharmacology, NYU Langone Health, New York, 10016, NY, USA.
Jonathan SerranoGenome Technology Center, NYU Langone Health, New York, 10016, NY, USA.
Adriana HeguyLaura and Isaac Perlmutter Cancer Center, NYU Langone Health, New York, 10016, NY, USA.
Karina RayGenome Technology Center, NYU Langone Health, New York, 10016, NY, USA.
Arline FaustinDepartment of Neurology, NYU Langone Health, New York, 10016, NY, USA.
Olga AminovaGenome Technology Center, NYU Langone Health, New York, 10016, NY, USA.
Igor DolgalevDepartment of Pathology, NYU Langone Health, New York, 10016, NY, USA.ORCID http://orcid.org/0000-0003-4451-126X
Stacie L StapletonJohns Hopkins All Children's Hospital, Cancer and Blood Disorders Institute, St Petersburg, 33701, FL, USA.
David ZagzagDivision of Neuropathology, NYU Langone Health, New York, 10016, NY, USA.
Luis ChiribogaDepartment of Pathology, NYU Langone Health, New York, 10016, NY, USA.ORCID http://orcid.org/0000-0002-2028-6873
Sharon L GardnerLaura and Isaac Perlmutter Cancer Center, NYU Langone Health, New York, 10016, NY, USA.
Jeffrey H WisoffDepartment of Neurosurgery, NYU Langone Health, New York, 10016, NY, USA.
John G GolfinosDepartment of Neurosurgery, NYU Langone Health, New York, 10016, NY, USA.
David CapperDepartment of Neuropathology, Institute of Pathology, University of Heidelberg, Heidelberg, 69120, Germany.
Volker HovestadtDivision of Molecular Genetics, German Cancer Research Center (DKFZ), Heidelberg, 69120, Germany.
Marc K RosenblumDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, 10065, NY, USA.
Dimitris G PlacantonakisJohns Hopkins All Children's Hospital, Cancer and Blood Disorders Institute, St Petersburg, 33701, FL, USA.
Sarah E LeBoeufDepartment of Pathology, NYU Langone Health, New York, 10016, NY, USA.
Thales Y PapagiannakopoulosDepartment of Pathology, NYU Langone Health, New York, 10016, NY, USA.
Lukas ChavezDivision of Pediatric Neurooncology, German Cancer Research Center (DKFZ), Heidelberg, 69120, Germany.ORCID http://orcid.org/0000-0002-8718-8848
Sama AhsanDivision of Pediatric Oncology, Johns Hopkins Hospital, Baltimore, 21218, MD, USA.
Charles G EberhartDepartment of Pathology, Johns Hopkins Hospital, Baltimore, 21218, MD, USA.
Stefan M PfisterHopp Children's Cancer Center at the NCT Heidelberg (KiTZ), Heidelberg, 69120, Germany.
David T W JonesHopp Children's Cancer Center at the NCT Heidelberg (KiTZ), Heidelberg, 69120, Germany.
Matthias A KarajannisDepartment of Pediatrics, Memorial Sloan Kettering Cancer Center, New York, 10065, NY, USA. karajanm@mskcc.org.ORCID http://orcid.org/0000-0002-7151-6528
NYU Langone Health · USGerman Cancer Research Center · DENew York Genome Center · USJohns Hopkins Hospital · USJohns Hopkins University · USMemorial Sloan Kettering Cancer Center · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Hongbiao Carl Lekaye · 1985 to 2026
$347.4M
Vaccine FacilityP30CA016087 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI ANIRBAN MAITRA · 1985 to 2026
$83.1M
PSYCHOSOCIAL COREP30AG008051 · NIA · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI SHAO, YONGZHAO · 1990 to 2019
$36.1M
Sandy Recovery Ventana Medical Systems Discovery XTS10OD018338 · OD · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI CHIRIBOGA, LUIS A · 2014 to 2014
$123k
NCI NIH HHS P30 CA008748NCI NIH HHS P30 CA016087NIA NIH HHS P30 AG008051NIH HHS S10 OD018338
6 · The paper itself

Abstract

Pineoblastoma is a rare and highly aggressive brain cancer of childhood, histologically belonging to the spectrum of primitive neuroectodermal tumors. Patients with germline mutations in DICER1, a ribonuclease involved in microRNA processing, have increased risk of pineoblastoma, but genetic drivers of sporadic pineoblastoma remain unknown. Here, we analyzed pediatric and adult pineoblastoma samples (n = 23) using a combination of genome-wide DNA methylation profiling and whole-exome sequencing or whole-genome sequencing. Pediatric and adult pineoblastomas showed distinct methylation profiles, the latter clustering with lower-grade pineal tumors and normal pineal gland. Recurrent variants were found in genes involved in PKA- and NF-κB signaling, as well as in chromatin remodeling genes. We identified recurrent homozygous deletions of DROSHA, acting upstream of DICER1 in microRNA processing, and a novel microduplication involving chromosomal region 1q21 containing PDE4DIP (myomegalin), comprising the ancient DUF1220 protein domain. Expresion of PDE4DIP and DUF1220 proteins was present exclusively in pineoblastoma with PDE4DIP gain.

Indexed as

Gene DeletionGene DuplicationAdaptor Proteins, Signal TransducingAdultAgedBrain NeoplasmsChildCytoskeletal ProteinsDEAD-box RNA HelicasesDNA MethylationExomeGenome, HumanHomozygoteHumansMiddle AgedMuscle ProteinsAdaptor Proteins, Signal TransducingCytoskeletal ProteinsDEAD-box RNA HelicasesDICER1 protein, humanDROSHA protein, humanMuscle ProteinsNuclear ProteinsPDE4DIP protein, humanRibonuclease III

Identifiers

PMID30030436
PMCPMC6054684
OpenAlexW2883516483

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.