Evidence map›Paper›PMID 30029592›Full record

ArticleBMC genomics2018

Antennal transcriptome analysis of the chemosensory gene families in Carposina sasakii (Lepidoptera: Carposinidae).

Zhiqiang Tian, Lina Sun, Yanyan Li, Linfa Quan, Huaijiang Zhang, Wentao Yan, Qiang Yue, Guisheng Qiu

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.8field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 39 citations in OpenAlex.

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  4. Sex Differences in Antennal Transcriptome ofInternational journal of molecular sciences · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Zhiqiang TianResearch Institute of Pomology, Chinese Academy of Agricultural Sciences, 98 South Street, Xinghai, Xingcheng, 125100, Liaoning, China.
Lina SunResearch Institute of Pomology, Chinese Academy of Agricultural Sciences, 98 South Street, Xinghai, Xingcheng, 125100, Liaoning, China.
Yanyan LiResearch Institute of Pomology, Chinese Academy of Agricultural Sciences, 98 South Street, Xinghai, Xingcheng, 125100, Liaoning, China.
Linfa QuanResearch Institute of Pomology, Chinese Academy of Agricultural Sciences, 98 South Street, Xinghai, Xingcheng, 125100, Liaoning, China.
Huaijiang ZhangResearch Institute of Pomology, Chinese Academy of Agricultural Sciences, 98 South Street, Xinghai, Xingcheng, 125100, Liaoning, China.
Wentao YanResearch Institute of Pomology, Chinese Academy of Agricultural Sciences, 98 South Street, Xinghai, Xingcheng, 125100, Liaoning, China.
Qiang YueResearch Institute of Pomology, Chinese Academy of Agricultural Sciences, 98 South Street, Xinghai, Xingcheng, 125100, Liaoning, China.
Guisheng QiuResearch Institute of Pomology, Chinese Academy of Agricultural Sciences, 98 South Street, Xinghai, Xingcheng, 125100, Liaoning, China. gszbpest@163.com.
Institute of Pomology · CNChinese Academy of Agricultural Sciences · CN

Funding

Fundamental Research Funds for Central Non-Profit Scientific Insititution No. 1610182016004National Natural Science Foundation of China No. 31601643
6 · The paper itself

Abstract

backgroundThe peach fruit moth, Carposina sasakii Matsumura (Lepidoptera: Carposinidae), poses a serious threat to a variety of fruits and causes significant economic loss owing to difficulties in its prevention and control. The olfactory sense is generally acknowledged to be a novel target for pest control. However, a systematic study of the olfactory genes expressed in C. sasakii has not been reported yet. Here, we reported the antennal transcriptome of C. sasakii using high-throughput sequencing and annotated the main chemosensory multi-gene families.

resultsIn the chemosensory gene families, 29 odorant-binding proteins, 13 chemosensory proteins, 1 sensory neuron membrane protein, 52 odorant receptors, 8 ionotropic receptors and 11 gustatory receptors were annotated in the C. sasakii antennal transcriptome. The number of olfactory genes obtained in our transcriptome was consistent with that identified in other lepidopteran insects, confirming that we basically accomplished the annotation of the chemosensory genes of C. sasakii in the adult antennal transcriptome. All sequences were annotated and analyzed by BLAST (basic local alignment search tool), and some chemosensory genes with specific functions were named according to the BLAST results and phylogenetic trees. Based on the expression profile in the transcriptome and phylogenetic analysis, differentially expressed genes (DEGs) were analyzed in both male and female adults. Finally, fluorescence quantitative real-time PCR was used to identify the male-specific or female-specific chemosensory genes that were putatively related to odor detection and recognition. Moreover, expression levels of OR33 and PBP2 were significantly higher in males than in females, indicating that these genes may interact with sex pheromones. We found some conserved antennal IRs and GRs involved in detecting sugar compounds (GR2, GR5, GR6, GR8) and carbon dioxide (GR1), which were also identified based on phylogenetic analysis.

conclusionsThere are 114 putative chemosensory proteins expressed in C. sasakii identified in this study. The identification of these proteins will make the molecular mechanism of odor recognition accessible.

Indexed as

Multigene FamilyAnimalsArthropod AntennaeFemaleGene Expression ProfilingInsect ProteinsMaleMembrane ProteinsMothsOrgan SpecificityReceptors, OdorantSex FactorsInsect ProteinsMembrane Proteinsodorant-binding proteinReceptors, OdorantAntennal transcriptomeExpression profileOlfactory genePeach fruit moth

Identifiers

PMID30029592
PMCPMC6053724
OpenAlexW2883916410

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.