Evidence map›Paper›PMID 30029003›Full record

ArticleMolecular cell2018

Translational Control through Differential Ribosome Pausing during Amino Acid Limitation in Mammalian Cells.

Alicia M Darnell, Arvind R Subramaniam, Erin K O'Shea

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cell, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 137 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
137citing papers in PubMed, 1 pooled it
8.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

137 citing papers in PubMed, 1 synthesis or guideline pooled it, 197 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. eIF5A and polyamines restrict mRNA levels in response to ribosome stalls.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  8. Substrate Binding Relieves Autoinhibition of the Mammalian GCN2 Kinase.bioRxiv : the preprint server for biology · 2026
    Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Translational Fidelity Decline in the Aging Oocyte and Embryo Development.International journal of molecular sciences · 2026
    Review
  18. Article
  19. Review
  20. A dietary pan-amino acid dropout screenbioRxiv : the preprint server for biology · 2025
    Article

77 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 3 institutions in 1 country.

Alicia M DarnellDepartment of Molecular and Cellular Biology, Harvard University, Cambridge, MA 02138, USA.
Arvind R SubramaniamBasic Sciences Division and Computational Biology Program of Public Health Sciences Division, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA. Electronic address: rasi@fredhutch.org.
Erin K O'SheaDepartment of Molecular and Cellular Biology, Harvard University, Cambridge, MA 02138, USA; Howard Hughes Medical Institute, Harvard University, Cambridge, MA 02138, USA; Department of Chemistry and Chemical Biology and Faculty of Arts and Sciences Center for Systems Biology, Harvard University, Cambridge, MA 02138, USA. Electronic address: osheae@hhmi.org.
Fred Hutch Cancer Center · USHarvard University · USHoward Hughes Medical Institute · US

Funding

Regulation of Protein Synthesis by Synonymous Codon UsageR35GM119835 · NIGMS · FRED HUTCHINSON CANCER RESEARCH CENTER · PI SUBRAMANIAM, ARVIND RASI · 2016 to 2025
$4.1M
Role of Synonymous Codons as Gene Regulators in Bacteria and Cancer CellsR00GM107113 · NIGMS · FRED HUTCHINSON CANCER RESEARCH CENTER · PI SUBRAMANIAM, ARVIND RASI · 2015 to 2016
$498k
Howard Hughes Medical InstituteNIGMS NIH HHS R00 GM107113NIGMS NIH HHS R35 GM119835
6 · The paper itself

Abstract

Limitation for amino acids is thought to regulate translation in mammalian cells primarily by signaling through the kinases mTORC1 and GCN2. We find that a selective loss of arginine tRNA charging during limitation for arginine regulates translation through ribosome pausing at two of six arginine codons. Surprisingly, limitation for leucine, an essential and abundant amino acid in protein, results in little or no ribosome pausing. Chemical and genetic perturbation of mTORC1 and GCN2 signaling revealed that their robust response to leucine limitation prevents ribosome pausing, while an insufficient response to arginine limitation leads to loss of tRNA charging and ribosome pausing. Ribosome pausing decreases protein production and triggers premature ribosome termination without reducing mRNA levels. Together, our results suggest that amino acids that are not optimally sensed by the mTORC1 and GCN2 pathways still regulate translation through an evolutionarily conserved mechanism based on codon-specific ribosome pausing.

Indexed as

Amino AcidsAnimalsArginineCodonEukaryotic Initiation Factor-2LeucineMammalsMechanistic Target of Rapamycin Complex 1Peptide Chain Elongation, TranslationalProtein BiosynthesisProtein Serine-Threonine KinasesRibosomesRNARNA, MessengerSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsAmino AcidsArginineCodonEukaryotic Initiation Factor-2LeucineMechanistic Target of Rapamycin Complex 1Protein Serine-Threonine KinasesRNARNA, MessengerSaccharomyces cerevisiae Proteinsamino acid starvationargininecodon usageGCN2leucinemTORpremature terminationribosome pausingribosome profilingtranslational control

Identifiers

PMID30029003
PMCPMC6516488
OpenAlexW2802607746

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.