Evidence map›Paper›PMID 30026532›Full record

ArticleNature communications2018

Genomic inference of the metabolism and evolution of the archaeal phylum Aigarchaeota.

Zheng-Shuang Hua, Yan-Ni Qu, Qiyun Zhu, En-Min Zhou, Yan-Ling Qi, Yi-Rui Yin, Yang-Zhi Rao, Ye Tian, Yu-Xian Li, Lan Liu and 5 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 65 papers.

0numbers the graph read from it
0cells of the map it votes in
65citing papers in PubMed
11.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

65 citing papers in PubMed, 132 citations in OpenAlex.

  1. Article
  2. Multifunctional Bioactivity ofCurrent issues in molecular biology · 2026
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  3. Article
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  6. Diversity of Archaea.Progress in molecular and subcellular biology · 2026
    Review
  7. Multi-omics insights into co-fermentation byFrontiers in nutrition · 2026
    Article
  8. Exploring proteinmBio · 2025
    Article
  9. Review
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  12. Article
  13. Characterization of DsrD and its interaction with the DsrAB dissimilatory sulfite reductase.Protein science : a publication of the Protein Society · 2024
    Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article

5 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 5 institutions in 2 countries.

Zheng-Shuang HuaState Key Laboratory of Biocontrol, Guangdong Key Laboratory of Plant Resources, School of Life Sciences, Sun Yat-Sen University, 510275, Guangzhou, China.
Yan-Ni QuState Key Laboratory of Biocontrol, Guangdong Key Laboratory of Plant Resources, School of Life Sciences, Sun Yat-Sen University, 510275, Guangzhou, China.
Qiyun ZhuDepartment of Pediatrics, University of California San Diego, La Jolla, CA, 92093, USA.ORCID http://orcid.org/0000-0002-3568-6271
En-Min ZhouState Key Laboratory of Biocontrol, Guangdong Key Laboratory of Plant Resources, School of Life Sciences, Sun Yat-Sen University, 510275, Guangzhou, China.
Yan-Ling QiState Key Laboratory of Biocontrol, Guangdong Key Laboratory of Plant Resources, School of Life Sciences, Sun Yat-Sen University, 510275, Guangzhou, China.
Yi-Rui YinState Key Laboratory of Biocontrol, Guangdong Key Laboratory of Plant Resources, School of Life Sciences, Sun Yat-Sen University, 510275, Guangzhou, China.
Yang-Zhi RaoState Key Laboratory of Biocontrol, Guangdong Key Laboratory of Plant Resources, School of Life Sciences, Sun Yat-Sen University, 510275, Guangzhou, China.
Ye TianState Key Laboratory of Biocontrol, Guangdong Key Laboratory of Plant Resources, School of Life Sciences, Sun Yat-Sen University, 510275, Guangzhou, China.
Yu-Xian LiState Key Laboratory of Biocontrol, Guangdong Key Laboratory of Plant Resources, School of Life Sciences, Sun Yat-Sen University, 510275, Guangzhou, China.
Lan LiuState Key Laboratory of Biocontrol, Guangdong Key Laboratory of Plant Resources, School of Life Sciences, Sun Yat-Sen University, 510275, Guangzhou, China.
Cindy J CastelleDepartment of Earth and Planetary Science, University of California, Berkeley, Berkeley, CA, 94720, USA.
Brian P HedlundSchool of Life Sciences, University of Nevada Las Vegas, Las Vegas, NV, 89154, USA.
Wen-Sheng ShuSchool of Life Sciences, South China Normal University, 510631, Guangzhou, China.
Rob KnightDepartment of Pediatrics, University of California San Diego, La Jolla, CA, 92093, USA.ORCID http://orcid.org/0000-0002-0975-9019
Wen-Jun LiState Key Laboratory of Biocontrol, Guangdong Key Laboratory of Plant Resources, School of Life Sciences, Sun Yat-Sen University, 510275, Guangzhou, China. liwenjun3@mail.sysu.edu.cn.ORCID http://orcid.org/0000-0002-1233-736X
Sun Yat-sen University · CNUniversity of California San Diego · USPlanetary Science Institute · USSouth China Normal University · CNUniversity of Nevada, Las Vegas · US

Funding

National Natural Science Foundation of China (National Science Foundation of China) 31600298
6 · The paper itself

Abstract

Microbes of the phylum Aigarchaeota are widely distributed in geothermal environments, but their physiological and ecological roles are poorly understood. Here we analyze six Aigarchaeota metagenomic bins from two circumneutral hot springs in Tengchong, China, to reveal that they are either strict or facultative anaerobes, and most are chemolithotrophs that can perform sulfide oxidation. Applying comparative genomics to the Thaumarchaeota and Aigarchaeota, we find that they both originated from thermal habitats, sharing 1154 genes with their common ancestor. Horizontal gene transfer played a crucial role in shaping genetic diversity of Aigarchaeota and led to functional partitioning and ecological divergence among sympatric microbes, as several key functional innovations were endowed by Bacteria, including dissimilatory sulfite reduction and possibly carbon monoxide oxidation. Our study expands our knowledge of the possible ecological roles of the Aigarchaeota and clarifies their evolutionary relationship to their sister lineage Thaumarchaeota.

Indexed as

Biological EvolutionGenome, ArchaealAnaerobiosisArchaeaBayes TheoremCarbon MonoxideChemoautotrophic GrowthChinaGene Transfer, HorizontalGenomicsHot SpringsHot TemperatureMetabolic Networks and PathwaysOxidation-ReductionPhylogenySulfidesCarbon MonoxideSulfides

Identifiers

PMID30026532
PMCPMC6053391
OpenAlexW2883336950

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.