Evidence map›Paper›PMID 30026309›Full record

ArticleThe EMBO journal2018

Small molecule inhibitors reveal an indispensable scaffolding role of RIPK2 in NOD2 signaling.

Matous Hrdinka, Lisa Schlicher, Bing Dai, Daniel M Pinkas, Joshua C Bufton, Sarah Picaud, Jennifer A Ward, Catherine Rogers, Chalada Suebsuwong, Sameer Nikhar and 6 more

Open access · hybridAbstract read
In one paragraph

Article in The EMBO journal, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
3.6field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 75 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 3 institutions in 2 countries.

Matous HrdinkaNuffield Department of Clinical Medicine, Ludwig Institute for Cancer Research, University of Oxford, Oxford, UK.ORCID 0000-0002-2981-2825
Lisa SchlicherNuffield Department of Clinical Medicine, Ludwig Institute for Cancer Research, University of Oxford, Oxford, UK.
Bing DaiDepartment of Developmental, Molecular & Chemical Biology, Tufts University School of Medicine, Boston, MA, USA.
Daniel M PinkasNuffield Department of Clinical Medicine, Structural Genomics Consortium, University of Oxford, Oxford, UK.
Joshua C BuftonNuffield Department of Clinical Medicine, Structural Genomics Consortium, University of Oxford, Oxford, UK.
Sarah PicaudNuffield Department of Clinical Medicine, Structural Genomics Consortium, University of Oxford, Oxford, UK.
Jennifer A WardNuffield Department of Clinical Medicine, Structural Genomics Consortium, University of Oxford, Oxford, UK.
Catherine RogersNuffield Department of Clinical Medicine, Structural Genomics Consortium, University of Oxford, Oxford, UK.
Chalada SuebsuwongDepartment of Chemistry, University of Houston, Houston, TX, USA.
Sameer NikharDepartment of Pharmacological and Pharmaceutical Sciences, University of Houston, Houston, TX, USA.
Gregory D CunyDepartment of Pharmacological and Pharmaceutical Sciences, University of Houston, Houston, TX, USA.
Kilian Vm HuberNuffield Department of Clinical Medicine, Structural Genomics Consortium, University of Oxford, Oxford, UK.ORCID 0000-0002-1103-5300
Panagis FilippakopoulosNuffield Department of Clinical Medicine, Structural Genomics Consortium, University of Oxford, Oxford, UK.
Alex N BullockNuffield Department of Clinical Medicine, Structural Genomics Consortium, University of Oxford, Oxford, UK.
Alexei DegterevDepartment of Developmental, Molecular & Chemical Biology, Tufts University School of Medicine, Boston, MA, USA alexei.degterev@tufts.edu mads.gyrd-hansen@ludwig.ox.ac.uk.ORCID 0000-0002-8240-7132
Mads Gyrd-HansenNuffield Department of Clinical Medicine, Ludwig Institute for Cancer Research, University of Oxford, Oxford, UK alexei.degterev@tufts.edu mads.gyrd-hansen@ludwig.ox.ac.uk.ORCID 0000-0001-5641-5019
University of Oxford · GBUniversity of Houston · USTufts University · US

Funding

RIP1/3 Kinases as New Targets in Malignant MesotheliomaR01CA190542 · NCI · RESEARCH INST OF FOX CHASE CAN CTR · PI BALACHANDRAN, SIDDHARTH, TESTA, JOSEPH R. · 2015 to 2019
$2.1M
Dissection of the new pro-inflammatory components of the necrosome complexR21AI124049 · NIAID · TUFTS UNIVERSITY BOSTON · PI DEGTEREV, ALEXEI, GERBER, SCOTT A. · 2017 to 2018
$466k
Medical Research Council MR/N010051/1NCI NIH HHS R01 CA190542NIAID NIH HHS R21 AI124049Wellcome Trust 095751/Z/11/ZWellcome Trust 102894/Z/13/ZWellcome Trust 106169/ZZ14/Z
6 · The paper itself

Abstract

RIPK2 mediates inflammatory signaling by the bacteria-sensing receptors NOD1 and NOD2. Kinase inhibitors targeting RIPK2 are a proposed strategy to ameliorate NOD-mediated pathologies. Here, we reveal that RIPK2 kinase activity is dispensable for NOD2 inflammatory signaling and show that RIPK2 inhibitors function instead by antagonizing XIAP-binding and XIAP-mediated ubiquitination of RIPK2. We map the XIAP binding site on RIPK2 to the loop between β2 and β3 of the N-lobe of the kinase, which is in close proximity to the ATP-binding pocket. Through characterization of a new series of ATP pocket-binding RIPK2 inhibitors, we identify the molecular features that determine their inhibition of both the RIPK2-XIAP interaction, and of cellular and

Indexed as

AnimalsCell Line, TumorFemaleHumansInhibitor of Apoptosis ProteinsMiceNod2 Signaling Adaptor ProteinProtein Kinase InhibitorsReceptor-Interacting Protein Serine-Threonine Kinase 2Receptor-Interacting Protein Serine-Threonine KinasesSignal TransductionX-Linked Inhibitor of Apoptosis ProteinBirc4 protein, mouseInhibitor of Apoptosis ProteinsNOD2 protein, humanNod2 protein, mouseNod2 Signaling Adaptor ProteinProtein Kinase InhibitorsReceptor-Interacting Protein Serine-Threonine Kinase 2Receptor-Interacting Protein Serine-Threonine KinasesRIPK2 protein, humanRipk2 protein, mouseXIAP protein, humanX-Linked Inhibitor of Apoptosis Proteinkinase inhibitorNOD2 signalingRIPK2ubiquitinXIAP

Identifiers

PMID30026309
PMCPMC6120666
OpenAlexW2884916450

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.