Evidence map›Paper›PMID 30022352›Full record

ArticleMolecular genetics and genomics : MGG2018

Characterization of a large sex determination region in Salix purpurea L. (Salicaceae).

Ran Zhou, David Macaya-Sanz, Eli Rodgers-Melnick, Craig H Carlson, Fred E Gouker, Luke M Evans, Jeremy Schmutz, Jerry W Jenkins, Juying Yan, Gerald A Tuskan and 2 more

Open access · greenAbstract read
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In one paragraph

Article in Molecular genetics and genomics : MGG, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
4.7field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 86 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 1 country.

Ran ZhouDepartment of Biology, West Virginia University, 53 Campus Drive, Morgantown, WV, 26506-6057, USA.
David Macaya-SanzDepartment of Biology, West Virginia University, 53 Campus Drive, Morgantown, WV, 26506-6057, USA.
Eli Rodgers-MelnickDepartment of Biology, West Virginia University, 53 Campus Drive, Morgantown, WV, 26506-6057, USA.
Craig H CarlsonHorticulture Section, School of Integrative Plant Science, Cornell University, New York State Agricultural Experiment Station, Geneva, NY, 14456, USA.
Fred E GoukerHorticulture Section, School of Integrative Plant Science, Cornell University, New York State Agricultural Experiment Station, Geneva, NY, 14456, USA.
Luke M EvansDepartment of Biology, West Virginia University, 53 Campus Drive, Morgantown, WV, 26506-6057, USA.
Jeremy SchmutzHudsonAlpha Institute of Biotechnology, 601 Genome Way Northwest, Huntsville, AL, 35806, USA.
Jerry W JenkinsHudsonAlpha Institute of Biotechnology, 601 Genome Way Northwest, Huntsville, AL, 35806, USA.
Juying YanDepartment of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA, 94598, USA.
Gerald A TuskanDepartment of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA, 94598, USA.
Lawrence B SmartHorticulture Section, School of Integrative Plant Science, Cornell University, New York State Agricultural Experiment Station, Geneva, NY, 14456, USA.
Stephen P DiFazioDepartment of Biology, West Virginia University, 53 Campus Drive, Morgantown, WV, 26506-6057, USA. spdifazio@mail.wvu.edu.ORCID http://orcid.org/0000-0003-4077-1590
West Virginia University · USCornell University · USJoint Genome Institute · USHudsonAlpha Institute for Biotechnology · USOak Ridge National Laboratory · US

Funding

Directorate for Biological Sciences DEB-1542509National Institute of Food and Agriculture 4705-WVU-USDA-9703Office of Science DE-AC02-05CH11231
6 · The paper itself

Abstract

Dioecy has evolved numerous times in plants, but heteromorphic sex chromosomes are apparently rare. Sex determination has been studied in multiple Salix and Populus (Salicaceae) species, and P. trichocarpa has an XY sex determination system on chromosome 19, while S. suchowensis and S. viminalis have a ZW system on chromosome 15. Here we use whole genome sequencing coupled with quantitative trait locus mapping and a genome-wide association study to characterize the genomic composition of the non-recombining portion of the sex determination region. We demonstrate that Salix purpurea also has a ZW system on chromosome 15. The sex determination region has reduced recombination, high structural polymorphism, an abundance of transposable elements, and contains genes that are involved in sex expression in other plants. We also show that chromosome 19 contains sex-associated markers in this S. purpurea assembly, along with other autosomes. This raises the intriguing possibility of a translocation of the sex determination region within the Salicaceae lineage, suggesting a common evolutionary origin of the Populus and Salix sex determination loci.

Indexed as

Chromosomes, PlantChromosome MappingEvolution, MolecularGenetic MarkersGenome, PlantGenome-Wide Association StudySalicaceaeSalixSex ChromosomesSex Determination ProcessesGenetic MarkersDioecyGenomeSalixSexSuppressed recombination

Identifiers

PMID30022352
OpenAlexW2885021318

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.