Evidence map›Paper›PMID 30022035›Full record

ArticleScientific reports2018

Compressing Networks with Super Nodes.

Natalie Stanley, Roland Kwitt, Marc Niethammer, Peter J Mucha

Abstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Functional network analysis reveals an immune tolerance mechanism in cancer.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Natalie StanleyCurriculum in Bioinformatics and Computational Biology, University of North Carolina at Chapel Hill, North Carolina, USA. stanleyn@stanford.edu.
Roland KwittDepartment of Computer Science, University of Salzburg, Salzburg, Austria.
Marc NiethammerDepartment of Computer Science, University of North Carolina at Chapel Hill, North Carolina, USA.
Peter J MuchaCarolina Center for Interdisciplinary Applied Mathematics, University of North Carolina at Chapel Hill, North Carolina, USA.

Funding

EXPRESSION AND IRON-INDEPENDENT FUNCTIONS OF SIDEROPHORES IN URINARY TRACT INFECTR01DK099534 · NIDDK · WASHINGTON UNIVERSITY · PI HENDERSON, JEFFREY P · 2014 to 2018
$1.8M
Metabolomic Mechanisms of Nutritional Immunity in the Urinary TractR01DK111930 · NIDDK · WASHINGTON UNIVERSITY · PI HENDERSON, JEFFREY P · 2018 to 2021
$1.4M
Metabolomic Mechanisms of Nutritional Immunity in the Urinary TractR56DK111930 · NIDDK · WASHINGTON UNIVERSITY · PI HENDERSON, JEFFREY P · 2016 to 2016
$125k
National Science Foundation (NSF) ECCS-1610762NIDDK NIH HHS R01 DK099534NIDDK NIH HHS R01 DK111930NIDDK NIH HHS R56 DK111930
6 · The paper itself

Abstract

Community detection is a commonly used technique for identifying groups in a network based on similarities in connectivity patterns. To facilitate community detection in large networks, we recast the network as a smaller network of 'super nodes', where each super node comprises one or more nodes of the original network. We can then use this super node representation as the input into standard community detection algorithms. To define the seeds, or centers, of our super nodes, we apply the 'CoreHD' ranking, a technique applied in network dismantling and decycling problems. We test our approach through the analysis of two common methods for community detection: modularity maximization with the Louvain algorithm and maximum likelihood optimization for fitting a stochastic block model. Our results highlight that applying community detection to the compressed network of super nodes is significantly faster while successfully producing partitions that are more aligned with the local network connectivity and more stable across multiple (stochastic) runs within and between community detection algorithms, yet still overlap well with the results obtained using the full network.

Indexed as

AlgorithmsCommunity NetworksComputer SimulationModels, TheoreticalHumans

Identifiers

PMID30022035
PMCPMC6052167

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.