Evidence map›Paper›PMID 30021852›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2018

Stress-testing the relationship between T cell receptor/peptide-MHC affinity and cross-reactivity using peptide velcro.

Marvin H Gee, Leah V Sibener, Michael E Birnbaum, Kevin M Jude, Xinbo Yang, Ricardo A Fernandes, Juan L Mendoza, Caleb R Glassman, K Christopher Garcia

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Structure-guided engineering of CD112 receptor variants for optimized immunotherapy.Molecular therapy : the journal of the American Society of Gene Therapy · 2025
    Article
  2. Article
  3. Review
  4. Review
  5. Article
  6. Review
  7. Article
  8. Review
  9. Structural understanding of T cell receptor triggering.Cellular & molecular immunology · 2020
    Review
  10. Review
  11. Review
  12. Review
  13. Article
  14. Improving T Cell Receptor On-Target Specificity via Structure-Guided Design.Molecular therapy : the journal of the American Society of Gene Therapy · 2019
    Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Marvin H GeeDepartment of Molecular and Cellular Physiology, Stanford University School of Medicine, Stanford, CA 94305.
Leah V SibenerDepartment of Molecular and Cellular Physiology, Stanford University School of Medicine, Stanford, CA 94305.
Michael E BirnbaumDepartment of Molecular and Cellular Physiology, Stanford University School of Medicine, Stanford, CA 94305.
Kevin M JudeDepartment of Molecular and Cellular Physiology, Stanford University School of Medicine, Stanford, CA 94305.
Xinbo YangDepartment of Molecular and Cellular Physiology, Stanford University School of Medicine, Stanford, CA 94305.
Ricardo A FernandesDepartment of Molecular and Cellular Physiology, Stanford University School of Medicine, Stanford, CA 94305.
Juan L MendozaDepartment of Molecular and Cellular Physiology, Stanford University School of Medicine, Stanford, CA 94305.
Caleb R GlassmanDepartment of Molecular and Cellular Physiology, Stanford University School of Medicine, Stanford, CA 94305.
K Christopher GarciaDepartment of Molecular and Cellular Physiology, Stanford University School of Medicine, Stanford, CA 94305; kcgarcia@stanford.edu.

Funding

Using a tonsil organoid system to probe conditions for the induction of protective antibody and T cell responses to influenza.U19AI057229 · NIAID · STANFORD UNIVERSITY · PI Mark Morris Davis · 2003 to 2026
$88.5M
X-ray Absorption Spectroscopy (XAS) pp.711-759P41GM103393 · NIGMS · STANFORD UNIVERSITY · PI HODGSON, KEITH O · 2012 to 2019
$30.6M
MOLECULAR &CELLULAR IMMUNOBIOLOGYT32AI007290 · NIAID · STANFORD UNIVERSITY · PI Sean Curtis Bendall, Olivia M Martinez · 1985 to 2026
$27.0M
TCR recognition of MHC class II peptide compexes in multiple sclerosisP01AI045757 · NIAID · DANA-FARBER CANCER INSTITUTE · PI KUCHROO, VIJAY K., LOVE, JOHN CHRISTOPHER · 1999 to 2017
$22.8M
Structural correlates of T cell receptor signalingR01AI103867 · NIAID · STANFORD UNIVERSITY · PI Kenan Christopher GARCIA · 2014 to 2026
$5.3M
Diversifying interferon functions through combinatorial and structural biologyK01CA175127 · NCI · STANFORD UNIVERSITY · PI MENDOZA, JUAN LUIS · 2013 to 2017
$584k
Probing T cell phenotypes and receptor specificities in cancer immunotherapyF31CA216926 · NCI · STANFORD UNIVERSITY · PI GEE, MARVIN HO-YAN · 2017 to 2017
$26k
Howard Hughes Medical InstituteNCI NIH HHS F31 CA216926NCI NIH HHS K01 CA175127NIAID NIH HHS P01 AI045757NIAID NIH HHS R01 AI103867NIAID NIH HHS T32 AI007290NIAID NIH HHS U19 AI057229NIGMS NIH HHS P41 GM103393
6 · The paper itself

Abstract

T cell receptors (TCRs) bind to peptide-major histocompatibility complex (pMHC) with low affinity (

Indexed as

Major Histocompatibility ComplexCross ReactionsHumansOligopeptidesPeptide LibraryProtein EngineeringReceptors, Antigen, T-CellMHC binding peptideOligopeptidesPeptide LibraryReceptors, Antigen, T-Cellcombinatorial biologycross-reactivitypeptideprotein engineeringT cell receptor

Identifiers

PMID30021852
PMCPMC6077720

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.