Evidence map›Paper›PMID 30021107›Full record

ArticleBiophysical journal2018

Direct Evidence for the Effect of Glycerol on Protein Hydration and Thermal Structural Transition.

Mitsuhiro Hirai, Satoshi Ajito, Masaaki Sugiyama, Hiroki Iwase, Shin-Ichi Takata, Nobutaka Shimizu, Noriyuki Igarashi, Anne Martel, Lionel Porcar

Erratum issuedAbstract read
In one paragraph

Article in Biophysical journal, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Effects of Glycerol and Phenolics onBiotech (Basel (Switzerland)) · 2025
    Article
  8. Article
  9. Investigation of biomolecular dynamics by sensitivity-enhancedJournal of magnetic resonance open · 2024
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Effects of low-molecular-weight polyols on the hydration status of the light-harvesting complex 2 from Rhodobacter sphaeroides 2.4.1.Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology · 2021
    Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Mitsuhiro HiraiGraduate School of Science and Technology, Gunma University, Maebashi, Gunma, Japan. Electronic address: mhirai@gunma-u.ac.jp.
Satoshi AjitoGraduate School of Science and Technology, Gunma University, Maebashi, Gunma, Japan.
Masaaki SugiyamaKyoto University Research Reactor Institute, Kumatori, Osaka, Japan.
Hiroki IwaseComprehensive Research Organization for Science and Society, Tokai, Japan.
Shin-Ichi TakataJ-PARC Center, Japan Atomic Energy Agency, Tokai, Japan.
Nobutaka ShimizuInstitute of Materials Structure Science, High Energy Accelerator Research Organization, Tsukuba, Ibaraki, Japan.
Noriyuki IgarashiInstitute of Materials Structure Science, High Energy Accelerator Research Organization, Tsukuba, Ibaraki, Japan.
Anne MartelInstitut Laue-Langevin, Grenoble, France.
Lionel PorcarInstitut Laue-Langevin, Grenoble, France.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The mechanisms of protein stabilization by uncharged solutes, such as polyols and sugars, have been intensively studied with respect to the chemical thermodynamics of molecular crowding. In particular, many experimental and theoretical studies have been conducted to explain the mechanism of the protective action on protein structures by glycerol through the relationship between hydration and glycerol solvation on protein surfaces. We used wide-angle x-ray scattering (WAXS), small-angle neutron scattering, and theoretical scattering function simulation to quantitatively characterize the hydration and/or solvation shell of myoglobin in aqueous solutions of up to 75% v/v glycerol. At glycerol concentrations below ∼40% v/v, the preservation of the hydration shell was dominant, which was reasonably explained by the preferential exclusion of glycerol from the protein surface (preferential hydration). In contrast, at concentrations above 50% v/v, the partial penetration or replacement of glycerol into or with hydration-shell water (neutral solvation by glycerol) was gradually promoted. WAXS results quantitatively demonstrated the neutral solvation, in which the replacement of hydrated water by glycerol was proportional to the volume fraction of glycerol in the solvent multiplied by an exchange rate (β ≤ 1). These phenomena were confirmed by small-angle neutron scattering measurements. The observed WAXS data covered the entire hierarchical structure of myoglobin, ranging from tertiary to secondary structures. We separately analyzed the effect of glycerol on the thermal stability of myoglobin at each hierarchical structural level. The thermal transition midpoint temperature at each hierarchical structural level was raised depending on the glycerol concentration, with enhanced transition cooperativeness between different hierarchical structural levels. The onset temperature of the helix-to-cross β-sheet transition (the initial process of amyloid formation) was evidently elevated. However, oligomerization connected to fibril formation was suppressed, even at a low glycerol concentration.

Indexed as

TemperatureAnimalsDose-Response Relationship, DrugGlycerolMyoglobinProtein Conformation, alpha-HelicalProtein Conformation, beta-StrandSolventsWaterGlycerolMyoglobinSolventsWater

Identifiers

PMID30021107
PMCPMC6050752

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.