Evidence map›Paper›PMID 30020972›Full record

ArticlePloS one2018

Exploring temporal patterns of bacterial and fungal DNA accumulation on a ventilation system filter for a Singapore university library.

Irvan Luhung, Yan Wu, Siyu Xu, Naomichi Yamamoto, Victor Wei-Chung Chang, William W Nazaroff

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.6field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 5 countries.

Irvan LuhungSinBerBEST Program, Berkeley Education Alliance for Research in Singapore (BEARS), Singapore, Singapore.ORCID 0000-0002-5292-9853
Yan WuSinBerBEST Program, Berkeley Education Alliance for Research in Singapore (BEARS), Singapore, Singapore.
Siyu XuDepartment of Environmental Health Sciences, Graduate School of Public Health, Seoul National University, Seoul, South Korea.
Naomichi YamamotoDepartment of Environmental Health Sciences, Graduate School of Public Health, Seoul National University, Seoul, South Korea.
Victor Wei-Chung ChangSinBerBEST Program, Berkeley Education Alliance for Research in Singapore (BEARS), Singapore, Singapore.
William W NazaroffSinBerBEST Program, Berkeley Education Alliance for Research in Singapore (BEARS), Singapore, Singapore.
Seoul National University · KRSingapore-MIT Alliance for Research and Technology · SGNanyang Technological University · SGShandong University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

introductionVentilation system filters process recirculated indoor air along with outdoor air. This function inspires the idea of using the filter as an indoor bioaerosol sampler. While promising, there remains a need to investigate several factors that could limit the accuracy of such a sampling approach. Among the important factors are the dynamics of microbial assemblages on filter surfaces over time and the differential influence of outdoor versus recirculated indoor air.

methodsThis study collected ventilation system filter samples from an air handling unit on a regular schedule over a 21-week period and analyzed the accumulation patterns of biological particles on the filter both quantitatively (using fluorometry and qPCR) and in terms of microbial diversity (using 16S rDNA and ITS sequencing).

resultsThe quantitative result showed that total and bacterial DNA accumulated monotonically, rising to 41 ng/cm2 for total DNA and to 2.8 ng/cm2 for bacterial DNA over the 21-week period. The accumulation rate of bacterial DNA correlated with indoor occupancy level. Fungal DNA first rose to 4.0 ng/cm2 before showing a dip to 1.4 ng/cm2 between weeks 6 and 10. The dip indicated a possible artifact of this sampling approach for quantitative analysis as DNA may not be conserved on the filter over the months-long service period. The sequencing results indicate major contributions from outdoor air for fungi and from recirculated indoor air for bacteria. Despite the quantitative changes, the community structure of the microbial assemblages was stable throughout the 21-week sampling period, highlighting the robustness of this sampling method for microbial profiling.

conclusionThis study supports the use of ventilation system filters as indoor bioaerosol samplers, but with caveats: 1) an outdoor reference is required to properly understand the contribution of outdoor bioaerosols; and 2) there is a need to better understand the persistence and durability of the targeted organisms on ventilation system filters.

Indexed as

Environmental MicrobiologyEnvironmental MonitoringConstruction MaterialsDNA, BacterialDNA, FungalFluorometryRNA, Ribosomal, 16SSingaporeUniversitiesDNA, BacterialDNA, FungalRNA, Ribosomal, 16S

Identifiers

PMID30020972
PMCPMC6051664
OpenAlexW2884526601

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.