Evidence map›Paper›PMID 30020925›Full record

ArticlePLoS genetics2018

Bacterial sensing: A putative amphipathic helix in RsiV is the switch for activating σV in response to lysozyme.

Lincoln T Lewerke, Paige J Kies, Ute Müh, Craig D Ellermeier

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Identification of a family of peptidoglycan transpeptidases reveals thatProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  3. Identification of DraRS inJournal of bacteriology · 2023
    Article
  4. Article
  5. Activation of the extracytoplasmic function σ factor σCurrent opinion in microbiology · 2022
    Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Review
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Lincoln T LewerkeDepartment of Microbiology and Immunology, Carver College of Medicine, University of Iowa, Iowa City, IA, United States of America.
Paige J KiesDepartment of Microbiology and Immunology, Carver College of Medicine, University of Iowa, Iowa City, IA, United States of America.ORCID 0000-0002-1665-8902
Ute MühDepartment of Microbiology and Immunology, Carver College of Medicine, University of Iowa, Iowa City, IA, United States of America.
Craig D EllermeierDepartment of Microbiology and Immunology, Carver College of Medicine, University of Iowa, Iowa City, IA, United States of America.ORCID 0000-0002-8953-5081
University of Iowa · US

Funding

Identification of daptomycin resistance mechanisms in Clostridioides difficileR01AI087834 · NIAID · UNIVERSITY OF IOWA · PI ELLERMEIER, CRAIG D · 2011 to 2025
$5.6M
NIAID NIH HHS R01 AI087834
6 · The paper itself

Abstract

Extra Cytoplasmic Function (ECF) σ factors are a diverse group of alternate σ factors bacteria use to respond to changes in the environment. The Bacillus subtilis ECF σ factor σV responds to lysozyme. In the absence of lysozyme, σV is held inactive by the anti-σ factor, RsiV. In the presence of lysozyme RsiV is degraded via regulated intramembrane proteolysis, which results in the release of σV and thus activation of lysozyme resistance genes. Signal peptidase is required to initiate degradation of RsiV. Previous work indicated that RsiV only becomes sensitive to signal peptidase upon direct binding to lysozyme. We have identified a unique domain of RsiV that is responsible for protecting RsiV from cleavage by signal peptidase in the absence of lysozyme. We provide evidence that this domain contains putative amphipathic helices. Disruption of the hydrophobic surface of these helices by introducing positively charged residues results in constitutive cleavage of RsiV by signal peptidase and thus constitutive σV activation. We provide further evidence that this domain contains amphipathic helices using a membrane-impermeable reagent. Finally, we show that upon lysozyme binding to RsiV, the hydrophobic face of the amphipathic helix becomes accessible to a membrane-impermeable reagent. Thus, we propose the amphipathic helices protect RsiV from cleavage in the absence of lysozyme. Additionally, we propose the amphipathic helices rearrange to form a suitable signal peptidase substrate upon binding of RsiV to lysozyme leading to the activation of σV.

Indexed as

Bacillus subtilisBacterial ProteinsCell MembraneHelix-Loop-Helix MotifsHydrophobic and Hydrophilic InteractionsMembrane ProteinsMuramidaseProtein BindingProtein DomainsProteolysisSerine EndopeptidasesSigma FactorBacterial ProteinsMembrane ProteinsMuramidaseSerine EndopeptidasesSigma Factortype I signal peptidase

Identifiers

PMID30020925
PMCPMC6066255
OpenAlexW2884655509

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.