Evidence map›Paper›PMID 30019318›Full record

Trial reportJournal of cancer research and clinical oncology2018

Clinical validation of the next-generation sequencing-based Extended RAS Panel assay using metastatic colorectal cancer patient samples from the phase 3 PRIME study.

Nitin Udar, Catherine Lofton-Day, Jun Dong, Darcy Vavrek, A Scott Jung, Kristen Meier, Anita Iyer, Ryan Slaughter, Karen Gutekunst, Bruce A Bach and 2 more

Registry-linked trialOpen access · hybridAbstract readClinical Trial, Phase IIIMulticenter StudyRandomized Controlled Trial
In one paragraph

Trial report in Journal of cancer research and clinical oncology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT00364013 (A Randomized, Multicenter, Phase 3 Study to Compare the Efficacy of Panitumumab in Combination With Oxaliplatin/ 5-fluorouracil/ Leucovorin to the Efficacy of Oxaliplatin/ 5-fluorouracil/ Leucovorin Alone in Patients With Previously Untreated Metastatic Colorectal Cancer), which is not on this map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.2field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT00364013 phase3completednot on this map

A Randomized, Multicenter, Phase 3 Study to Compare the Efficacy of Panitumumab in Combination With Oxaliplatin/ 5-fluorouracil/ Leucovorin to the Efficacy of Oxaliplatin/ 5-fluorouracil/ Leucovorin Alone in Patients With Previously Untreated Metastatic Colorectal Cancer

TypeinterventionalSponsorAmgenRan2006 to 2013Enrolled1,183ConditionsMetastatic Colorectal CancerArmsPanitumumab, FOLFOX regimen
3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 25 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. Review
  9. Review
  10. Molecular testing for colorectal cancer: Clinical applications.World journal of gastrointestinal oncology · 2021
    Review
  11. Article
  12. Perspectives in the Treatment ofFrontiers in oncology · 2021
    Article
  13. Review
  14. Gastroenterology report · 2020
    Review
  15. Review
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 3 countries.

Nitin UdarDepartment of Clinical Genomics Assay Development, Oncology, Illumina, Inc., 5200 Illumina Way, San Diego, CA, 92122, USA. greatbioinformatics@yahoo.com.ORCID http://orcid.org/0000-0001-8533-9190
Catherine Lofton-DayDepartment of Medical Sciences, Amgen Inc., Thousand Oaks, CA, USA.
Jun DongDepartment of Biostatistical Sciences, Amgen Inc., Thousand Oaks, CA, USA.
Darcy VavrekDepartment of Biostatistics, Illumina, Inc., San Diego, CA, USA.
A Scott JungDepartment of Research and Development, Amgen Inc., Thousand Oaks, CA, USA.
Kristen MeierDepartment of Biostatistics, Illumina, Inc., San Diego, CA, USA.
Anita IyerDepartment of Clinical Genomics Assay Development, Oncology, Illumina, Inc., 5200 Illumina Way, San Diego, CA, 92122, USA.
Ryan SlaughterDepartment of Clinical Affairs, Illumina, Inc., San Diego, CA, USA.
Karen GutekunstDepartment of Clinical Genomics Assay Development, Oncology, Illumina, Inc., 5200 Illumina Way, San Diego, CA, 92122, USA.
Bruce A BachDepartment of Global Oncology Development, Amgen Inc., Thousand Oaks, CA, USA.
Marc PeetersDepartment of Oncology, Antwerp University Hospital, Edegem, Belgium.
Jean-Yves DouillardDepartment of Medical Oncology, ICO René Gauducheau, Nantes, France.
Illumina (United States) · USAmgen (United States) · USAntwerp University Hospital · BECentre Hospitalier René-Dubos · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

purposeTo validate a next-generation sequencing (NGS)-based companion diagnostic using the MiSeqDx

methodsSamples from PRIME, which compared first-line panitumumab + FOLFOX4 with FOLFOX4, were processed according to predefined criteria using a multiplex assay that included input DNA qualification, library preparation, sequencing, and the bioinformatics reporting pipeline. NGS mutational analysis of KRAS and NRAS exons 2, 3, and 4 was performed and compared with Sanger sequencing.

resultsIn 441 samples, positive percent agreement of the Extended RAS Panel with Sanger sequencing was 98.7% and negative percent agreement was 97.6%. For clinical validation (n = 528), progression-free survival (PFS) and overall survival (OS) were compared between patients with RAS mutations (RAS Positive) and those without (RAS Negative). Panitumumab + FOLFOX4 improved PFS in RAS Negative patients (P = 0.02). Quantitative interaction testing indicated the treatment effect (measured by the hazard ratio of panitumumab + FOLFOX4 versus FOLFOX4) differed for RAS Negative versus RAS Positive for PFS (P = 0.0038) and OS (P = 0.0323).

conclusionsNGS allows for broad, rapid, highly specific analyses of genomic regions. These results support use of the Extended RAS Panel as a companion diagnostic for selecting patients for panitumumab, and utilization is consistent with recent clinical guidelines regarding mCRC RAS testing. Overall, approximately 13% more patients were detected with the Extended RAS Panel versus KRAS exon 2 alone. CLINICAL TRIAL REGISTRY IDENTIFIER: NCT00364013 (ClinicalTrials.gov).

Indexed as

MutationAntineoplastic Combined Chemotherapy ProtocolsBiomarkers, TumorColorectal NeoplasmsHigh-Throughput Nucleotide SequencingHumansLiver NeoplasmsPrognosisras ProteinsBiomarkers, Tumorras ProteinsColorectalGastrointestinal cancersMolecular diagnosis and prognosisMutation detection methodsNew software for data analysis

Identifiers

PMID30019318
PMCPMC6153611
OpenAlexW2884656693

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.