ArticleAMB Express2018
Genetic characterization of extraintestinal Escherichia coli isolates from chicken, cow and swine.
Article in AMB Express, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.
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Who cites it
10 citing papers in PubMed.
- Multidrug-resistance in backyard poultry and their link to management and biosecurity conditions in Eastern Spain.Poultry science · 2026Article
- Comparative performance of traditional and commercial DNA extraction methods for fish gut microbiota analysis.Molecular biology reports · 2026Article
- Multi-omics analysis reveals that glyceryl monooleate mitigates PEDV-induced intestinal injury in piglets.BMC microbiology · 2026Article
- Population structure and antibiotic resistance of swine extraintestinal pathogenic Escherichia coli from China.Nature communications · 2024Article
- Whole genome sequencing analysis of non-O157 Shiga toxin-producingIranian journal of veterinary research · 2024Article
- Molecular evolution and population genetics of glutamate decarboxylase acid resistance pathway in lactic acid bacteria.Frontiers in genetics · 2023Article
- Whole Genome Sequencing (WGS) Analysis of Virulence and AMR Genes in Extended-Spectrum β-Lactamase (ESBL)-ProducingAntibiotics (Basel, Switzerland) · 2022Article
- Comparison of Fitness Cost, Stability, and Conjugation Frequencies ofAntibiotics (Basel, Switzerland) · 2022Article
- Shiga toxin-producingVeterinary research forum : an international quarterly journal · 2022Article
- Distribution of Beta-Lactamase Producing Gram-Negative Bacterial Isolates in Isabela River of Santo Domingo, Dominican Republic.Frontiers in microbiology · 2020Article
Corrections and comments
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Authors and funding
11 authors.
Funding
Abstract
Phenotypic determination of antimicrobial resistance in bacteria is very important for diagnosis and treatment, but sometimes this procedure needs further genetic evaluation. Whole-genome sequencing plays a critical role in deciphering and advancing our understanding of bacterial evolution, transmission, and surveillance of antimicrobial resistance. In this study, whole-genome sequencing was performed on nineteen clinically extraintestinal Escherichia coli isolates from chicken, cows and swine and showing different antimicrobial susceptibility. A total of 44 different genes conferring resistance to 11 classes of antimicrobials were detected in 15 of 19 E. coli isolates (78.9%), and 22 types of plasmids were detected in 15/19 (78.9%) isolates. In addition, whole-genome sequencing of these 19 isolates identified 111 potential virulence factors, and 53 of these VFDB-annotated genes were carried by all these 19 isolates. Twelve different virulence genes were identified while the most frequent ones were gad (glutamate decarboxylase), iss (increased serum survival) and lpfA (long polar fimbriae). All isolates harbored at least one of the virulence genes. The findings from comparative genomic analyses of the 19 diverse E. coli isolates in this study provided insights into molecular basis of the rising multi-drug resistance in E. coli.
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