Evidence map›Paper›PMID 30018706›Full record

ArticleAmerican journal of translational research2018

Identification of proteins interacting with pORF5 in the pathogenesis of

Yan Zou, Wenting Dai, Wenbo Lei, Shengmei Su, Qiulin Huang, Zhou Zhou, Chaoqun Chen, Zhongyu Li

Open access · greenAbstract read
In one paragraph

Article in American journal of translational research, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.6field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 11 citations in OpenAlex.

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  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Yan ZouPathogenic Biology Institute, School of Medicine, University of South China Hengyang 421001, Hunan, China.
Wenting DaiPathogenic Biology Institute, School of Medicine, University of South China Hengyang 421001, Hunan, China.
Wenbo LeiPathogenic Biology Institute, School of Medicine, University of South China Hengyang 421001, Hunan, China.
Shengmei SuPathogenic Biology Institute, School of Medicine, University of South China Hengyang 421001, Hunan, China.
Qiulin HuangDepartment of General Surgery, The First Affiliated Hospital of University of South China Hengyang 421001, Hunan, China.
Zhou ZhouPathogenic Biology Institute, School of Medicine, University of South China Hengyang 421001, Hunan, China.
Chaoqun ChenPathogenic Biology Institute, School of Medicine, University of South China Hengyang 421001, Hunan, China.
Zhongyu LiPathogenic Biology Institute, School of Medicine, University of South China Hengyang 421001, Hunan, China.
University of South China · CNFirst Affiliated Hospital of University of South China · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectiveThis study is to identify and investigate the proteins interacting with pORF5 implicated in the pathogenesis of

methodsThe isobaric tags for relative and absolute quantitation (iTRAQ) approach combined with nano liquid chromatography-tandem mass spectrometry (NanoLC-MS/MS) analysis was applied to identify and quantify the differentially expressed proteins in the pORF5-transfected HeLa (pORF5-HeLa) cells and the control vector-transfected HeLa (vector-HeLa) cells. Quantitative real-time PCR (qRT-PCR) and Western blot analysis were performed to detect the mRNA and protein expression levels.

resultsTotally 3355 proteins were quantified by employing biological replicates, 314 of which were differentially expressed between the pORF5-HeLa and vector-HeLa cells. Nine differentially expressed proteins (HIST1H1C, HBA1, PARK7, HMGB1, HMGB2, CLIC1, KRT7, SFN, and CDKN2A) were subjected to qRT-PCR, and two over-expressed proteins (HMGB1 and PRAK7) were subjected to the Western blot analysis, to validate the proteomic results. The results from the qRT-PCR and Western blot analysis were consistent with the findings from the proteomic analysis. Moreover, pORF5 could inhibit the TNF-α-induced apoptosis in HeLa cells. Through siRNA-mediated functional screening, the high-mobility group box 1 (HMGB1) was shown to be relevant to the inhibition of the apoptotic response in the host cells.

conclusionIdentification of key proteins interacting with pORF5 could contribute to the understanding and further exploration of the function of pORF5 in the pathogenic mechanisms of

Indexed as

Chlamydia trachomatis (C. trachomatis)HMGB1isobaric tags for relative and absolute quantitation (iTRAQ)pORF5quantitative proteomic analysis

Identifiers

PMID30018706
PMCPMC6038076
OpenAlexW2923394339

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.