Evidence map›Paper›PMID 30018309›Full record

ArticleScientific reports2018

Differentially Methylated Genes in Saliva are linked to Childhood Stress.

Ligia A Papale, Leslie J Seltzer, Andy Madrid, Seth D Pollak, Reid S Alisch

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed, 2 pooled it
5.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 2 syntheses or guidelines pooled it, 67 citations in OpenAlex.

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  16. Epigenetic Biomarkers for Environmental Exposures and Personalized Breast Cancer Prevention.International journal of environmental research and public health · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Ligia A PapaleDepartment of Psychiatry, University of Wisconsin, Madison, USA.
Leslie J SeltzerWaisman Center, University of Wisconsin, Madison, USA.
Andy MadridDepartment of Psychiatry, University of Wisconsin, Madison, USA.
Seth D PollakWaisman Center, University of Wisconsin, Madison, USA. spollak@wisc.edu.
Reid S AlischDepartment of Psychiatry, University of Wisconsin, Madison, USA. alisch@wisc.edu.ORCID 0000-0003-0637-4137
University of Wisconsin–Madison · USUniversity of Wisconsin System · US

Funding

WISCONSIN CENTER ON MENTAL RETARDATION: CORE SUPPORTP30HD003352 · NICHD · UNIVERSITY OF WISCONSIN-MADISON · PI DAVIDSON, RICHARD J · 1985 to 2015
$25.2M
Emotion Processing:Risk for Psychopathology in ChildrenR01MH061285 · NIMH · UNIVERSITY OF WISCONSIN-MADISON · PI SETH D POLLAK · 2001 to 2026
$12.4M
TRAINING PROGRAM IN EMOTION RESEARCHT32MH018931 · NIMH · UNIVERSITY OF WISCONSIN-MADISON · PI Richard J Davidson · 1989 to 2026
$11.6M
Waisman Intellectual and Developmental Disabilities Research Center Down Syndrome RegistryU54HD090256 · NICHD · UNIVERSITY OF WISCONSIN-MADISON · PI CHANG, QIANG · 2016 to 2020
$6.0M
Neurobehavioral Correlates of Early DeprivationR01MH068858 · NIMH · UNIVERSITY OF WISCONSIN-MADISON · PI POLLAK, SETH D · 2004 to 2008
$1.5M
NICHD NIH HHS U54 HD090256NIMH NIH HHS R01 MH061285NIMH NIH HHS R01 MH068858NIMH NIH HHS T32 MH018931U.S. Department of Health & Human Services | NIH | Eunice Kennedy Shriver National Institute of Child Health and Human Development (NICHD) P30-HD03352
6 · The paper itself

Abstract

Chronic and severe stress exposure in early childhood is associated with the development of psychiatric disorders. Yet, the molecular mechanisms underlying this relationship remain poorly understood. Here, we profile molecular marks (DNA methylation and gene expression) throughout the human genome to determine the associations between childhood stress exposure and gene regulation. To do so, we collected saliva tissue from prepubertal girls (mean age 10.9 ± 1.26 years) who had experienced different levels of childhood adversity, ranging from mild to severe. We found 122 differentially methylated genes (FDR P-value < 0.05) associated with high childhood stress exposures that affect brain development. Of these differentially methylated genes, 12 also differed in gene expression. To further investigate the potential effects of stress exposure on gene regulation, we examined the DNA sequences flanking all the differentially methylated loci. This analysis revealed enrichment of known binding sites for transcription factors, suggesting that DNA methylation may regulate gene expression by mediating transcription factor binding on these genes. Together, these findings indicate a possible neuromolecular mechanism linking children's social experiences with risk for anxiety and depressive disorders.

Indexed as

DNA MethylationGene Expression RegulationStress, PsychologicalChildChild BehaviorChild DevelopmentEpigenesis, GeneticFemaleGene Expression ProfilingGenome, HumanHumansSaliva

Identifiers

PMID30018309
PMCPMC6050255
OpenAlexW2845784957

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.