Evidence map›Paper›PMID 30018250›Full record

ArticleInternational journal of molecular sciences2018

The Transcriptomic Landscape of Gastric Cancer: Insights into Epstein-Barr Virus Infected and Microsatellite Unstable Tumors.

Irene Gullo, Joana Carvalho, Diana Martins, Diana Lemos, Ana Rita Monteiro, Marta Ferreira, Kakoli Das, Patrick Tan, Carla Oliveira, Fátima Carneiro and 1 more

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed, 1 pooled it
1.1field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 1 synthesis or guideline pooled it, 33 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Review
  4. Review
  5. Unusual or Uncommon Histology of Gastric Cancer.Journal of gastric cancer · 2024
    Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Signaling pathways and therapeutic interventions in gastric cancer.Signal transduction and targeted therapy · 2022
    Review
  11. Molecular Pathology of Gastric Cancer.Journal of gastric cancer · 2022
    Review
  12. Review
  13. Review
  14. Article
  15. Review
  16. Review
  17. Article
  18. EBV-associated gastric cancer evades T-cell immunity by PD-1/PD-L1 interactions.Gastric cancer : official journal of the International Gastric Cancer Association and the Japanese Gastric Cancer Association · 2019
    Article
  19. Review
  20. Molecular Features Distinguish Gastric Cancer Subtypes.International journal of molecular sciences · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 3 countries.

Irene GulloDepartment of Pathology, Centro Hospitalar de São João, Porto 4200-319, Portugal. irene.gullo12@gmail.com.
Joana CarvalhoInstitute of Molecular Pathology and Immunology, University of Porto (Ipatimup), Porto 4200-135, Portugal. jcarvalho@ipatimup.pt.
Diana MartinsInstitute of Molecular Pathology and Immunology, University of Porto (Ipatimup), Porto 4200-135, Portugal. dianam@ipatimup.pt.
Diana LemosInstitute of Molecular Pathology and Immunology, University of Porto (Ipatimup), Porto 4200-135, Portugal. dlemos@ipatimup.pt.
Ana Rita MonteiroInstitute of Molecular Pathology and Immunology, University of Porto (Ipatimup), Porto 4200-135, Portugal. anaritapatriciomonteiro@gmail.com.
Marta FerreiraInstitute of Molecular Pathology and Immunology, University of Porto (Ipatimup), Porto 4200-135, Portugal. martaf@ipatimup.pt.
Kakoli DasCancer and Stem Cell Biology Program, Duke-NUS Medical School, Singapore 169857, Singapore. kakoli.das@duke-nus.edu.sg.
Patrick TanCancer and Stem Cell Biology Program, Duke-NUS Medical School, Singapore 169857, Singapore. gmstanp@duke-nus.edu.sg.
Carla OliveiraInstitute of Molecular Pathology and Immunology, University of Porto (Ipatimup), Porto 4200-135, Portugal. carlaol@ipatimup.pt.
Fátima CarneiroDepartment of Pathology, Centro Hospitalar de São João, Porto 4200-319, Portugal. fcarneiro@ipatimup.pt.ORCID 0000-0002-1964-1006
Patrícia OliveiraInstitute of Molecular Pathology and Immunology, University of Porto (Ipatimup), Porto 4200-135, Portugal. poliveira@ipatimup.pt.
Universidade do Porto · PTDuke-NUS Medical School · SGNational University of Singapore · SG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundEpstein-Barr Virus (EBV) positive and microsatellite unstable (MSI-high) gastric cancer (GC) are molecular subgroups with distinctive molecular profiles. We explored the transcriptomic differences between EBV+ and MSI-high GCs, and the expression of current GC immunotherapy targets such as PD-1, PD-L1, CTLA4 and Dies1/VISTA.

methodsUsing Nanostring Technology and comparative bioinformatics, we analyzed the expression of 499 genes in 46 GCs, classified either as EBV positive (EBER in situ hybridization) or MSI-high (PCR/fragment analysis). PD-L1 protein expression was assessed by immunohistochemistry.

resultsFrom the 46 GCs, 27 tested MSI-high/EBV-, 15 tested MSS/EBV+ and four tested MSS/EBV-. The Nanostring CodeSet could segregate GCs according to MSI and, to a lesser extent, EBV status. Functional annotation of differentially expressed genes associated MSI-high/EBV- GCs with mitotic activity and MSS/EBV+ GCs with immune response. PD-L1 protein expression, evaluated in stromal immune cells, was lower in MSI-high/EBV- GCs. High mRNA expression of

conclusionsEBV+ and MSI-high GCs present distinct transcriptomic profiles. GCLS/EBV+ cases frequently present co-expression of multiple immunotherapy targets, a finding with putative therapeutic implications.

Indexed as

Gene Expression Regulation, NeoplasticMicrosatellite InstabilityTranscriptomeB7-H1 AntigenCluster AnalysisEpstein-Barr Virus InfectionsGene Expression ProfilingGene OntologyHerpesvirus 4, HumanHumansRetrospective StudiesStomach NeoplasmsB7-H1 AntigenCD274 protein, humanEBVEpstein-Barr Virusgastric cancermicrosatellite instabilityMSItranscriptomic profiling

Identifiers

PMID30018250
PMCPMC6073163
OpenAlexW2883576431

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.