Evidence map›Paper›PMID 30017563›Full record

ArticleStructure (London, England : 1993)2018

Crystal Structure of an Unusual Single-Stranded DNA-Binding Protein Encoded by Staphylococcal Cassette Chromosome Elements.

Ignacio Mir-Sanchis, Ying Zhang Pigli, Phoebe Ann Rice

Abstract read
In one paragraph

Article in Structure (London, England : 1993), 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Review
  2. Article
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  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Ignacio Mir-SanchisDepartment of Biochemistry and Molecular Biology, The University of Chicago, 929 E. 57(th) St., Chicago, IL 60637, USA.
Ying Zhang PigliDepartment of Biochemistry and Molecular Biology, The University of Chicago, 929 E. 57(th) St., Chicago, IL 60637, USA.
Phoebe Ann RiceDepartment of Biochemistry and Molecular Biology, The University of Chicago, 929 E. 57(th) St., Chicago, IL 60637, USA. Electronic address: price@uchicago.edu.

Funding

Lifestyle of the SCCmec element and mechanisms of self-loading helicasesR01GM121655 · NIGMS · UNIVERSITY OF CHICAGO · PI RICE, PHOEBE A · 2017 to 2020
$1.7M
NIGMS NIH HHS R01 GM121655
6 · The paper itself

Abstract

Methicillin-resistant Staphylococcus aureus is a global public health threat. Methicillin resistance is carried on mobile genetic elements belonging to the staphylococcal cassette chromosome (SCC) family. The molecular mechanisms that SCC elements exploit for stable maintenance and for horizontal transfer are poorly understood. Previously, we identified several conserved SCC genes with putative functions in DNA replication, including lp1413, which we found encodes a single-stranded DNA (ssDNA)-binding protein. We report here the 2.18 Å crystal structure of LP1413, which shows that it adopts a winged helix-turn-helix fold rather than the OB-fold normally seen in replication-related ssDNA-binding proteins. However, conserved residues form a hydrophobic pocket not normally found in winged helix-turn-helix domains. LP1413 also has a conserved but disordered C-terminal tail. As deletion of the tail does not significantly affect cooperative binding to ssDNA, we propose that it mediates interactions with other proteins. LP1413 could play several different roles in vivo.

Indexed as

Amino Acid SequenceBacterial ProteinsBinding SitesCloning, MolecularConserved SequenceCrystallography, X-RayDNA, BacterialDNA-Binding ProteinsDNA ReplicationDNA, Single-StrandedEscherichia coliGene ExpressionGenetic VectorsHydrophobic and Hydrophilic InteractionsMethicillin ResistanceMethicillin-Resistant Staphylococcus aureusBacterial ProteinsDNA, BacterialDNA-Binding ProteinsDNA, Single-StrandedRecombinant Proteinsantibiotic resistancehorizontal gene transfermobile genetic elementsMRSASCCmecSSBssDNA bindingStaphylococcus aureuswHTH

Identifiers

PMID30017563
PMCPMC6084467

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.