ArticleGenome biology2018
GIVE: portable genome browsers for personal websites.
Article in Genome biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
13 citing papers in PubMed.
- A fine-scale Arabidopsis chromatin landscape reveals chromatin conformation-associated transcriptional dynamics.Nature communications · 2024Article
- Gosling: A Grammar-based Toolkit for Scalable and Interactive Genomics Data Visualization.IEEE transactions on visualization and computer graphics · 2022Article
- Global profiling of RNA-chromatin interactions reveals co-regulatory gene expression networks in Arabidopsis.Nature plants · 2021Article
- REPIC: a database for exploring the NGenome biology · 2020Article
- CATA: a comprehensive chromatin accessibility database for cancer.Database : the journal of biological databases and curation · 2020Article
- ENdb: a manually curated database of experimentally supported enhancers for human and mouse.Nucleic acids research · 2020Article
- Mapping RNA-chromatin interactions by sequencing with iMARGI.Nature protocols · 2019Article
- EpiAlignment: alignment with both DNA sequence and epigenomic data.Nucleic acids research · 2019Article
- Tasks, Techniques, and Tools for Genomic Data Visualization.Computer graphics forum : journal of the European Association for Computer Graphics · 2019Article
- Genome-wide colocalization of RNA-DNA interactions and fusion RNA pairs.Proceedings of the National Academy of Sciences of the United States of America · 2019Article
- Pergola: Boosting Visualization and Analysis of Longitudinal Data by Unlocking Genomic Analysis Tools.iScience · 2018Article
- GIVE: portable genome browsers for personal websites.Genome biology · 2018Article
- Making genome browsers portable and personal.Genome biology · 2018Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
5 authors.
Funding
Abstract
Growing popularity and diversity of genomic data demand portable and versatile genome browsers. Here, we present an open source programming library called GIVE that facilitates the creation of personalized genome browsers without requiring a system administrator. By inserting HTML tags, one can add to a personal webpage interactive visualization of multiple types of genomics data, including genome annotation, "linear" quantitative data, and genome interaction data. GIVE includes a graphical interface called HUG (HTML Universal Generator) that automatically generates HTML code for displaying user chosen data, which can be copy-pasted into user's personal website or saved and shared with collaborators. GIVE is available at: https://www.givengine.org/ .
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What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.