Evidence map›Paper›PMID 30016623›Full record

ArticleDevelopmental cell2018

Global Proteome Remodeling during ER Stress Involves Hac1-Driven Expression of Long Undecoded Transcript Isoforms.

Kelsey Marie Van Dalfsen, Stefanie Hodapp, Abdurrahman Keskin, George Maxwell Otto, Charles Andrew Berdan, Andrea Higdon, Tia Cheunkarndee, Daniel Koji Nomura, Marko Jovanovic, Gloria Ann Brar

Open access · bronzeAbstract read
In one paragraph

Article in Developmental cell, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 57 citations in OpenAlex.

  1. Article
  2. The coupling effect ofSynthetic and systems biotechnology · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Kelsey Marie Van DalfsenDepartment of Molecular and Cell Biology, University of California, Berkeley, CA 94720, USA.
Stefanie HodappDepartment of Biological Sciences, Columbia University, New York, NY 10027, USA.
Abdurrahman KeskinDepartment of Biological Sciences, Columbia University, New York, NY 10027, USA.
George Maxwell OttoDepartment of Molecular and Cell Biology, University of California, Berkeley, CA 94720, USA.
Charles Andrew BerdanDepartments of Chemistry and Nutritional Sciences and Toxicology, University of California, Berkeley, CA 94720, USA.
Andrea HigdonDepartment of Molecular and Cell Biology, University of California, Berkeley, CA 94720, USA.
Tia CheunkarndeeDepartment of Molecular and Cell Biology, University of California, Berkeley, CA 94720, USA.
Daniel Koji NomuraDepartment of Molecular and Cell Biology, University of California, Berkeley, CA 94720, USA; Departments of Chemistry and Nutritional Sciences and Toxicology, University of California, Berkeley, CA 94720, USA.
Marko JovanovicDepartment of Biological Sciences, Columbia University, New York, NY 10027, USA.
Gloria Ann BrarDepartment of Molecular and Cell Biology, University of California, Berkeley, CA 94720, USA. Electronic address: gabrar@berkeley.edu.
University of California, Berkeley · USColumbia University · US

Funding

THE MOLECULAR BASIS OF CELL FUNCTIONT32GM007232 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI BILDER, DAVID, UNAL, ELCIN · 1985 to 2022
$36.4M
GENOMICST32HG000047 · NHGRI · UNIVERSITY OF CALIFORNIA BERKELEY · PI RASMUS NIELSEN, Daniel Soleyman Rokhsar · 2000 to 2026
$13.5M
Dissecting the roles of pervasive short ORFs in meiosisDP2GM119138 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI BRAR, GLORIA ANN · 2015 to 2015
$2.4M
Regulation of Protein Production Dynamics:RNA Binding Proteins and the Ribosome CodeR35GM128802 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI JOVANOVIC, MARKO · 2018 to 2022
$2.3M
Annotating the Role of Dysregulated Inositol Phosphate Metabolism in Malignant CaR01CA172667 · NCI · UNIVERSITY OF CALIFORNIA BERKELEY · PI NOMURA, DANIEL · 2013 to 2017
$1.7M
DEVELOPMENT OF GENOMIC INSTRUMENTATIONK22HG000047 · NHGRI · UNIVERSITY OF CALIFORNIA IRVINE · PI BRODY, JAMES P · 2000 to 2004
$964k
NCI NIH HHS R01 CA172667NHGRI NIH HHS K22 HG000047NIGMS NIH HHS DP2 GM119138NIGMS NIH HHS R35 GM128802NIGMS NIH HHS T32 GM007232
6 · The paper itself

Abstract

Cellular stress responses often require transcription-based activation of gene expression to promote cellular adaptation. Whether general mechanisms exist for stress-responsive gene downregulation is less clear. A recently defined mechanism enables both up- and downregulation of protein levels for distinct gene sets by the same transcription factor via coordinated induction of canonical mRNAs and long undecoded transcript isoforms (LUTIs). We analyzed parallel gene expression datasets to determine whether this mechanism contributes to the conserved Hac1-driven branch of the unfolded protein response (UPR

Indexed as

Basic-Leucine Zipper Transcription FactorsDown-RegulationElectron Transport Chain Complex ProteinsEndoplasmic ReticulumGene Expression Regulation, FungalProtein FoldingProtein IsoformsProteomeRepressor ProteinsRNA, Long NoncodingRNA, MessengerSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSignal TransductionStress, PhysiologicalTranscriptional ActivationBasic-Leucine Zipper Transcription FactorsElectron Transport Chain Complex ProteinsHAC1 protein, S cerevisiaeProtein IsoformsProteomeRepressor ProteinsRNA, Long NoncodingRNA, MessengerSaccharomyces cerevisiae ProteinsTranscription FactorsER stressgene expression regulationHac1LUTIstress responseunfolded protein responseUPR

Identifiers

PMID30016623
PMCPMC6140797
OpenAlexW2883606517

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.