Evidence map›Paper›PMID 30015805›Full record

ArticleScientific data2018

Mass spectrometry quantitation of proteins from small pools of developing auditory and vestibular cells.

Jocelyn F Krey, Deborah I Scheffer, Dongseok Choi, Ashok Reddy, Larry L David, David P Corey, Peter G Barr-Gillespie

Open access · goldAbstract readDataset
In one paragraph

Article in Scientific data, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
0.7field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. A Phosphoproteomics Study of the SoybeanFrontiers in plant science · 2022
    Article
  11. Article
  12. Annexin A4 Is Dispensable for Hair Cell Development and Function.Frontiers in cell and developmental biology · 2021
    Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Jocelyn F KreyOregon Hearing Research Center & Vollum Institute, Oregon Health & Science University, Portland, OR 97239, USA.
Deborah I SchefferDepartment of Neurobiology, Harvard Medical School, Boston, MA 02115, USA.
Dongseok ChoiOHSU-PSU School of Public Health, Oregon Health & Science University, Portland, OR 97239, USA.ORCID 0000-0002-1552-4072
Ashok ReddyDepartment of Biochemistry and Molecular Biology, Oregon Health & Science University, Portland, OR 97239, USA.
Larry L DavidDepartment of Biochemistry and Molecular Biology, Oregon Health & Science University, Portland, OR 97239, USA.
David P CoreyDepartment of Neurobiology, Harvard Medical School, Boston, MA 02115, USA.
Peter G Barr-GillespieOregon Hearing Research Center & Vollum Institute, Oregon Health & Science University, Portland, OR 97239, USA.ORCID 0000-0002-9787-5860
Oregon Health & Science University · USHarvard University · US

Funding

Understanding the origins of rapid recurrence of pancreatic cancer after resectionP30CA069533 · NCI · OREGON HEALTH & SCIENCE UNIVERSITY · PI Luiz Eduardo Bertassoni · 1997 to 2026
$60.5M
Proteomics CoreP30EY010572 · NEI · OREGON HEALTH & SCIENCE UNIVERSITY · PI TED S ACOTT · 1995 to 2026
$19.4M
Hair Bundle Structure and DynamicsR01DC011034 · NIDCD · OREGON HEALTH & SCIENCE UNIVERSITY · PI BARR-GILLESPIE, PETER GORDON · 2010 to 2024
$6.4M
MOLECULAR BASIS OF INHERITED DEAFNESSR01DC002281 · NIDCD · MASSACHUSETTS GENERAL HOSPITAL · PI COREY, DAVID P · 1994 to 2018
$4.4M
LTQ Orbitrap VelosS10OD012246 · OD · OREGON HEALTH & SCIENCE UNIVERSITY · PI DAVID, LARRY L · 2012 to 2012
$854k
NCI NIH HHS P30 CA069533NEI NIH HHS P30 EY010572NIDCD NIH HHS R01 DC011034NIH HHS S10 OD012246
6 · The paper itself

Abstract

Hair cells of the inner ear undergo postnatal development that leads to formation of their sensory organelles, synaptic machinery, and in the case of cochlear outer hair cells, their electromotile mechanism. To examine how the proteome changes over development from postnatal days 0 through 7, we isolated pools of 5000 Pou4f3-Gfp positive or negative cells from the cochlea or utricles; these cell pools were analysed by data-dependent and data-independent acquisition (DDA and DIA) mass spectrometry. DDA data were used to generate spectral libraries, which enabled identification and accurate quantitation of specific proteins using the DIA datasets. DIA measurements were extremely sensitive; we were able to detect proteins present at less than one part in 100,000 from only 312 hair cells. The DDA and DIA datasets will be valuable for accurately quantifying proteins in hair cells and non-hair cells over this developmental window.

Indexed as

ProteomeAnimalsCochleaHair Cells, AuditoryHair Cells, VestibularMass SpectrometryMiceProteome

Identifiers

PMID30015805
PMCPMC6049031
OpenAlexW2883843045

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.