Evidence map›Paper›PMID 30015457›Full record

ArticlePolish journal of microbiology2018

The Heavy-Metal Resistance Determinant of Newly Isolated Bacterium from a Nickel-Contaminated Soil in Southwest Slovakia.

Matej Remenár, Anna Kamlárová, Jana Harichová, Marcel Zámocký, Peter Ferianc

Open access · goldAbstract read
In one paragraph

Article in Polish journal of microbiology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.5field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 15 citations in OpenAlex.

  1. Review
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Matej RemenárLaboratory of Phylogenomic Ecology, Institute of Molecular Biology of the Slovak Academy of Sciences,Bratislava,Slovakia.
Anna KamlárováLaboratory of Phylogenomic Ecology, Institute of Molecular Biology of the Slovak Academy of Sciences,Bratislava,Slovakia.
Jana HarichováLaboratory of Phylogenomic Ecology, Institute of Molecular Biology of the Slovak Academy of Sciences,Bratislava,Slovakia.
Marcel ZámockýLaboratory of Phylogenomic Ecology, Institute of Molecular Biology of the Slovak Academy of Sciences,Bratislava,Slovakia.
Peter FeriancLaboratory of Phylogenomic Ecology, Institute of Molecular Biology of the Slovak Academy of Sciences,Bratislava,Slovakia.
Slovak Academy of Sciences · SKInstitute of Molecular Biology of the Slovak Academy of Sciences · SK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A bacterial isolate MR-CH-I2 [KC809939] isolated from soil contaminated mainly by high nickel concentrations in southwest Slovakia was previously found carrying nccA-like heavy-metal resistance determinant, marked as MR-CH-I2-HMR [KF218096]. According to phylogenetic analysis of short (696 bp) 16S rDNA (16S rRNA) sequences this bacterium was tentatively assigned to Uncultured beta proteobacterium clone GC0AA7ZA05PP1 [JQ913301]. nccA-like gene product was on the same base of its partial (581 bp) sequences tentatively assigned to CzcA family heavy metal efflux pump [YP_001899332] from Ralstonia picketii 12J with 99% similarity. In this study the bacterium MR-CH-I2 and its heavy-metal resistance determinant were more precisely identified. This bacterial isolate was on the base of phylogenetic analysis of almost the whole (1,500 bp) 16S rDNA (16S rRNA) sequence, MR-CH-I2 [MF102046], and sequence for gyrB gene and its product respectively, MR-CH-I2-gyrB [MF134666], assigned to R. picketii 12J [CP001068] with 99 and 100% similarities, respectively. In addition, the whole nccA-like heavy-metal resistance gene sequence (3,192 bp), marked as MR-CH-I2-nccA [KR476581], was obtained and on the base of phylogenetic analysis its assignment was confirmed to MULTISPECIES: cation efflux system protein CzcA [WP_004635342] from Burkholderiaceae with 98% similarity. Furthermore, although the bacterium carried one high molecular plasmid of about 50 kb in size, nccA-like gene was not located on this plasmid. Finally, the results from RT-PCR analysis showed that MR-CH-I2-nccA gene was significantly induced only by the addition of nickel.

Indexed as

PhylogenySoil MicrobiologyBacteriaDNA, BacterialMetals, HeavyNickelPlasmidsReal-Time Polymerase Chain ReactionRNA, Ribosomal, 16SSequence Analysis, DNASlovakiaSoil PollutantsDNA, BacterialMetals, HeavyNickelRNA, Ribosomal, 16SSoil Pollutants16S rRNA (16S rDNA)DNA gyrase subunit Bheavy-metal resistance determinanthigh molecular plasmidnickel-contaminated soilRT-qPCR

Identifiers

PMID30015457
PMCPMC7256691
OpenAlexW2844682701

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.