Evidence map›Paper›PMID 30014612›Full record

ArticleMicrobial biotechnology2018

Exploring bioactive peptides from bacterial secretomes using PepSAVI-MS: identification and characterization of Bac-21 from Enterococcus faecalis pPD1.

Christine L Kirkpatrick, Nicole C Parsley, Tessa E Bartges, Casey E Wing, Sushma Kommineni, Christopher J Kristich, Nita H Salzman, Steven M Patrie, Leslie M Hicks

Abstract read
In one paragraph

Article in Microbial biotechnology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Christine L KirkpatrickDepartment of Chemistry, The University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Nicole C ParsleyDepartment of Chemistry, The University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Tessa E BartgesDepartment of Chemistry, The University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Casey E WingDepartment of Pathology, Southwestern Medical Center, The University of Texas, Austin, TX, USA.
Sushma KommineniDivision of Gastroenterology, Department of Pediatrics, Medical College of Wisconsin, Milwaukee, WI, USA.
Christopher J KristichDepartment of Microbiology and Immunology, Medical College of Wisconsin, Milwaukee, WI, USA.
Nita H SalzmanDivision of Gastroenterology, Department of Pediatrics, Medical College of Wisconsin, Milwaukee, WI, USA.
Steven M PatrieDepartment of Chemistry, Northwestern University, Evanston, IL, USA.
Leslie M HicksDepartment of Chemistry, The University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.ORCID 0000-0002-8008-3998

Funding

MOLECULAR AND CELLULAR BIOPHYSICS TRAINING PROGRAMT32GM008570 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI KUHLMAN, BRIAN A, SLEP, KEVIN C · 1995 to 2022
$5.1M
Algorithms for Glyco-Proteoform DetectionR01GM115739 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI PATRIE, STEVEN MATTHEW · 2016 to 2020
$1.9M
PepSAVI-MS for discovery of novel botanical antimicrobial peptidesR01GM125814 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI HICKS, LESLIE M. · 2018 to 2022
$1.6M
NIGMS NIH HHS R01 GM115739NIGMS NIH HHS R01 GM125814NIGMS NIH HHS T32 GM008570
6 · The paper itself

Abstract

As current methods for antibiotic drug discovery are being outpaced by the rise of antimicrobial resistance, new methods and innovative technologies are necessary to replenish our dwindling arsenal of antimicrobial agents. To this end, we developed the PepSAVI-MS pipeline to expedite the search for natural product bioactive peptides. Herein we demonstrate expansion of PepSAVI-MS for the discovery of bacterial-sourced bioactive peptides through identification of the bacteriocin Bac-21 from Enterococcus faecalis pPD1. Minor pipeline modifications including implementation of bacteria-infused agar diffusion assays and optional digestion of peptide libraries highlight the versatility and wide adaptability of the PepSAVI-MS pipeline. Additionally, we have experimentally validated the primary protein sequence of the active, mature Bac-21 peptide for the first time and have confirmed its identity with respect to primary sequence and post-translational processing. Successful application of PepSAVI-MS to bacterial secretomes as demonstrated herein establishes proof-of-principle for use in novel microbial bioactive peptide discovery.

Indexed as

Bacterial ProteinsBacteriocinsBiological ProductsEnterococcus faecalisMass SpectrometryProteomeBacterial ProteinsBacteriocinsBiological ProductsProteome

Identifiers

PMID30014612
PMCPMC6116741

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.