Evidence map›Paper›PMID 30013062›Full record

ArticleNature chemical biology2018

Facile target validation in an animal model with intracellularly expressed monobodies.

Ankit Gupta, Jing Xu, Shirley Lee, Steven T Tsai, Bo Zhou, Kohei Kurosawa, Michael S Werner, Akiko Koide, Alexander J Ruthenburg, Yali Dou and 1 more

Abstract readValidation Study
In one paragraph

Article in Nature chemical biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Inhibition of RAS-driven signaling and tumorigenesis with a pan-RAS monobody targeting the Switch I/II pocket.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  9. Review
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Review
  18. Article
  19. Cytosolic delivery of inhibitory antibodies with cationic lipids.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  20. Advances in targeted degradation of endogenous proteins.Cellular and molecular life sciences : CMLS · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Ankit GuptaPerlmutter Cancer Center, New York University Langone Medical Center, New York, NY, USA.
Jing XuDepartment of Pathology, University of Michigan, Ann Arbor, MI, USA.
Shirley LeeDepartment of Pathology, University of Michigan, Ann Arbor, MI, USA.
Steven T TsaiPerlmutter Cancer Center, New York University Langone Medical Center, New York, NY, USA.
Bo ZhouDepartment of Pathology, University of Michigan, Ann Arbor, MI, USA.
Kohei KurosawaPerlmutter Cancer Center, New York University Langone Medical Center, New York, NY, USA.
Michael S WernerDepartment of Molecular Genetics and Cell Biology, The University of Chicago, Chicago, IL, USA.
Akiko KoidePerlmutter Cancer Center, New York University Langone Medical Center, New York, NY, USA.
Alexander J RuthenburgDepartment of Molecular Genetics and Cell Biology, The University of Chicago, Chicago, IL, USA.ORCID http://orcid.org/0000-0003-2709-4564
Yali DouDepartment of Pathology, University of Michigan, Ann Arbor, MI, USA. yalid@med.umich.edu.
Shohei KoidePerlmutter Cancer Center, New York University Langone Medical Center, New York, NY, USA. Shohei.Koide@nyumc.org.ORCID http://orcid.org/0000-0001-5473-4358
University of Chicago · USUniversity of Michigan · USNYU Langone Health · US

Funding

Vaccine FacilityP30CA016087 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI ADRIANA HEGUY · 1985 to 2026
$83.1M
Function of MLL in transcription regulationR01GM082856 · NIGMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI DOU, YALI · 2009 to 2023
$4.0M
Genetically encoded designer inhibitors for functional epigenomicsR01DA036887 · NIDA · UNIVERSITY OF CHICAGO · PI KOIDE, SHOHEI · 2013 to 2017
$2.0M
Molecular mechanisms of SHP2 signaling dissected with designer binding proteinsR01CA194864 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI KOIDE, SHOHEI · 2016 to 2020
$1.8M
NCI NIH HHS P30 CA016087NCI NIH HHS R01 CA194864NIDA NIH HHS R01 DA036887NIGMS NIH HHS R01 GM082856
6 · The paper itself

Abstract

Rapidly determining the biological effect of perturbing a site within a potential drug target could guide drug discovery efforts, but it remains challenging. Here, we describe a facile target validation approach that exploits monobodies, small synthetic binding proteins that can be fully functionally expressed in cells. We developed a potent and selective monobody to WDR5, a core component of the mixed lineage leukemia (MLL) methyltransferase complex. The monobody bound to the MLL interaction site of WDR5, the same binding site for small-molecule inhibitors whose efficacy has been demonstrated in cells but not in animals. As a genetically encoded reagent, the monobody inhibited proliferation of an MLL-AF9 cell line in vitro, suppressed its leukemogenesis and conferred a survival benefit in an in vivo mouse leukemia model. The capacity of this approach to readily bridge biochemical, structural, cellular characterization and tests in animal models may accelerate discovery and validation of druggable sites.

Indexed as

AnimalsCell Line, TumorCell ProliferationDisease Models, AnimalHomeodomain ProteinsIntracellular Signaling Peptides and ProteinsMiceOligopeptidesProteinsReproducibility of ResultsRNA, Messengerhomeobox protein HOXA9Homeodomain ProteinsIntracellular Signaling Peptides and ProteinsMM-401OligopeptidesProteinsRNA, MessengerWdr5 protein, mouse

Identifiers

PMID30013062
PMCPMC6103845
OpenAlexW2884127107

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.