ArticleInternational journal of molecular sciences2018
RFAmyloid: A Web Server for Predicting Amyloid Proteins.
Article in International journal of molecular sciences, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.
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Who cites it
20 citing papers in PubMed, 68 citations in OpenAlex.
- Experimentally validated deep learning control of protein aggregation.Communications chemistry · 2026Article
- Predicting amyloid proteins using attention-based long short-term memory.PeerJ. Computer science · 2025Article
- Proteomic Evidence for Amyloidogenic Cross-Seeding in Fibrinaloid Microclots.International journal of molecular sciences · 2024Article
- Massive experimental quantification of amyloid nucleation allows interpretable deep learning of protein aggregation.bioRxiv : the preprint server for biology · 2024Article
- AggreProt: a web server for predicting and engineering aggregation prone regions in proteins.Nucleic acids research · 2024Article
- Advanced computational approaches to understand protein aggregation.Biophysics reviews · 2024Review
- Special Protein or RNA Molecules Computational Identification.International journal of molecular sciences · 2023Article
- Plant Defense Elicitation by the Hydrophobin Cerato-Ulmin and Correlation with Its Structural Features.International journal of molecular sciences · 2023Article
- ENTAIL: yEt aNoTher amyloid fIbrils cLassifier.BMC bioinformatics · 2022Article
- Protein Design: From the Aspect of Water Solubility and Stability.Chemical reviews · 2022Review
- Prion-like proteins: from computational approaches to proteome-wide analysis.FEBS open bio · 2021Review
- sgRNACNN: identifying sgRNA on-target activity in four crops using ensembles of convolutional neural networks.Plant molecular biology · 2021Article
- Prediction of Transmembrane Regions, Cholesterol, and Ganglioside Binding Sites in Amyloid-Forming Proteins Indicate Potential for Amyloid Pore Formation.Frontiers in molecular neuroscience · 2021Article
- Phase Separation and Disorder-to-Order Transition of Human Brain Expressed X-Linked 3 (hBEX3) in the Presence of Small Fragments of tRNA.Journal of molecular biology · 2020Article
- Structure and Aggregation Mechanisms in Amyloids.Molecules (Basel, Switzerland) · 2020Review
- WALTZ-DB 2.0: an updated database containing structural information of experimentally determined amyloid-forming peptides.Nucleic acids research · 2020Article
- Identification of Proteins of Tobacco Mosaic Virus by Using a Method of Feature Extraction.Frontiers in genetics · 2020Article
- On the Conformational Dynamics of β-Amyloid Forming Peptides: A Computational Perspective.Frontiers in bioengineering and biotechnology · 2020Review
- CirRNAPL: A web server for the identification of circRNA based on extreme learning machine.Computational and structural biotechnology journal · 2020Article
- PredAmyl-MLP: Prediction of Amyloid Proteins Using Multilayer Perceptron.Computational and mathematical methods in medicine · 2020Article
Corrections and comments
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Authors and funding
4 authors at 3 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Amyloid is an insoluble fibrous protein and its mis-aggregation can lead to some diseases, such as Alzheimer's disease and Creutzfeldt⁻Jakob's disease. Therefore, the identification of amyloid is essential for the discovery and understanding of disease. We established a novel predictor called RFAmy based on random forest to identify amyloid, and it employed SVMProt 188-D feature extraction method based on protein composition and physicochemical properties and pse-in-one feature extraction method based on amino acid composition, autocorrelation pseudo acid composition, profile-based features and predicted structures features. In the ten-fold cross-validation test, RFAmy's overall accuracy was 89.19% and F-measure was 0.891. Results were obtained by comparison experiments with other feature, classifiers, and existing methods. This shows the effectiveness of RFAmy in predicting amyloid protein. The RFAmy proposed in this paper can be accessed through the URL http://server.malab.cn/RFAmyloid/.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.