Evidence map›Paper›PMID 30012610›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2018

Evolutionary repurposing of a sulfatase: A new Michaelis complex leads to efficient transition state charge offset.

Charlotte M Miton, Stefanie Jonas, Gerhard Fischer, Fernanda Duarte, Mark F Mohamed, Bert van Loo, Bálint Kintses, Shina C L Kamerlin, Nobuhiko Tokuriki, Marko Hyvönen and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.9field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 45 citations in OpenAlex.

  1. Article
  2. Structural and evolutionary constraints of organophosphate resistance in dipteran carboxylesterases.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
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  11. A mechanistic view of enzyme evolution.Protein science : a publication of the Protein Society · 2020
    Review
  12. Harnessing Conformational Plasticity to Generate Designer Enzymes.Journal of the American Chemical Society · 2020
    Review
  13. Review
  14. Article
  15. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 3 countries.

Charlotte M MitonDepartment of Biochemistry, University of Cambridge, CB2 1GA Cambridge, United Kingdom.
Stefanie JonasDepartment of Biochemistry, University of Cambridge, CB2 1GA Cambridge, United Kingdom.
Gerhard FischerDepartment of Biochemistry, University of Cambridge, CB2 1GA Cambridge, United Kingdom.
Fernanda DuarteDepartment of Chemistry, Biomedicinskt Centrum (BMC), Uppsala University, 751 23 Uppsala, Sweden.
Mark F MohamedDepartment of Biochemistry, University of Cambridge, CB2 1GA Cambridge, United Kingdom.
Bert van LooDepartment of Biochemistry, University of Cambridge, CB2 1GA Cambridge, United Kingdom.
Bálint KintsesDepartment of Biochemistry, University of Cambridge, CB2 1GA Cambridge, United Kingdom.
Shina C L KamerlinDepartment of Chemistry, Biomedicinskt Centrum (BMC), Uppsala University, 751 23 Uppsala, Sweden.ORCID 0000-0002-3190-1173
Nobuhiko TokurikiDepartment of Biochemistry, University of Cambridge, CB2 1GA Cambridge, United Kingdom.
Marko HyvönenDepartment of Biochemistry, University of Cambridge, CB2 1GA Cambridge, United Kingdom.ORCID 0000-0001-8683-4070
Florian HollfelderDepartment of Biochemistry, University of Cambridge, CB2 1GA Cambridge, United Kingdom; fh111@cam.ac.uk.ORCID 0000-0002-1367-6312
University of Cambridge · GBUppsala University · SEUniversity of British Columbia · CA

Funding

Biotechnology and Biological Sciences Research Council
6 · The paper itself

Abstract

The recruitment and evolutionary optimization of promiscuous enzymes is key to the rapid adaptation of organisms to changing environments. Our understanding of the precise mechanisms underlying enzyme repurposing is, however, limited: What are the active-site features that enable the molecular recognition of multiple substrates with contrasting catalytic requirements? To gain insights into the molecular determinants of adaptation in promiscuous enzymes, we performed the laboratory evolution of an arylsulfatase to improve its initially weak phenylphosphonate hydrolase activity. The evolutionary trajectory led to a 100,000-fold enhancement of phenylphosphonate hydrolysis, while the native sulfate and promiscuous phosphate mono- and diester hydrolyses were only marginally affected (≤50-fold). Structural, kinetic, and in silico characterizations of the evolutionary intermediates revealed that two key mutations, T50A and M72V, locally reshaped the active site, improving access to the catalytic machinery for the phosphonate. Measured transition state (TS) charge changes along the trajectory suggest the creation of a new Michaelis complex (E•S, enzyme-substrate), with enhanced leaving group stabilization in the TS for the promiscuous phosphonate (

Indexed as

Directed Molecular EvolutionArylsulfatasesCatalysisCatalytic DomainHydrolysisOrganophosphorus CompoundsProtein ConformationArylsulfatasesOrganophosphorus Compoundsphenylphosphonic acidcatalytic promiscuitydirected evolutionenzyme–substrate complementaritylinear free-energy relationshipphosphate transfer

Identifiers

PMID30012610
PMCPMC6077717
OpenAlexW2883211058

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.