Evidence map›Paper›PMID 30012182›Full record

ArticleParasites & vectors2018

Amino acid permease 3 (aap3) coding sequence as a target for Leishmania identification and diagnosis of leishmaniases using high resolution melting analysis.

Karl Erik Müller, Ricardo Andrade Zampieri, Juliana Ide Aoki, Sandra Marcia Muxel, Audun Helge Nerland, Lucile Maria Floeter-Winter

Open access · goldAbstract read
In one paragraph

Article in Parasites & vectors, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
3.9field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 26 citations in OpenAlex.

  1. Assessment of High-Resolution Melting Curve Analysis forPathogens (Basel, Switzerland) · 2024
    Article
  2. Accurate Identification ofJournal of arthropod-borne diseases · 2022
    Article
  3. Article
  4. Article
  5. Review
  6. Rapid screening ofExperimental and therapeutic medicine · 2021
    Article
  7. Article
  8. Review
  9. Review
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Karl Erik MüllerDepartment of Clinical Science, Faculty of Medicine, University of Bergen, Postboks 7804, 5020, Bergen, Norway. karl.muller@uib.no.ORCID http://orcid.org/0000-0003-4020-9733
Ricardo Andrade ZampieriDepartment of Physiology, Institute of Biosciences, University of São Paulo, Rua do Matão Travessa 14 no. 101, São Paulo, SP, 05508900, Brazil.
Juliana Ide AokiDepartment of Physiology, Institute of Biosciences, University of São Paulo, Rua do Matão Travessa 14 no. 101, São Paulo, SP, 05508900, Brazil.
Sandra Marcia MuxelDepartment of Physiology, Institute of Biosciences, University of São Paulo, Rua do Matão Travessa 14 no. 101, São Paulo, SP, 05508900, Brazil.
Audun Helge NerlandDepartment of Clinical Science, Faculty of Medicine, University of Bergen, Postboks 7804, 5020, Bergen, Norway.
Lucile Maria Floeter-WinterDepartment of Physiology, Institute of Biosciences, University of São Paulo, Rua do Matão Travessa 14 no. 101, São Paulo, SP, 05508900, Brazil.
Universidade de São Paulo · BRUniversity of Bergen · NO

Funding

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior 2015/10002
6 · The paper itself

Abstract

backgroundThe leishmaniases comprise a spectrum of clinical manifestations caused by different species of Leishmania. Identification of species is important for diagnosis, treatment and follow-up management. However, there is no gold standard for species identification. High resolution melting analysis (HRM) offers a possibility to differentiate Leishmania species without the need for processing of the PCR-product. The amino acid permease 3 (aap3) gene is an exclusive target for trypanosomatids and is conserved among Leishmania spp., thus it can be a valuable target for an HRM assay for diagnosis of the leishmaniases.

resultsThe HRM dissociation profiles of three amplicons targeting the aap3-coding region allowed the discrimination of L. (Leishmania) donovani, L. (L.) infantum, L. (L.) major, L. (L.) tropica, L. (L.) mexicana, L. (L.) amazonensis, L. (Viannia) braziliensis, L. (V.) guyanensis, L. (V.) lainsoni, L. (V.) naiffi and L. (V.) shawi using DNA from promastigote cultures. The protocol was validated with DNA samples from clinical infection in humans and a cat, naturally infected sand flies, and experimentally infected mice.

conclusionsHRM analysis using the aap3 coding sequence as target is a relatively cheap, fast and robust strategy to detect and discriminate Leishmania species from all the endemic regions worldwide. The target and method proved to be useful in clinical, field and experimental samples, thus it could be used as a tool in diagnosis as well as ecological and epidemiological studies.

Indexed as

Amino Acid Transport SystemsAnimalsBase SequenceDNA, ProtozoanLeishmaniaLeishmaniasisMiceNucleic Acid DenaturationReproducibility of ResultsSensitivity and SpecificityAmino Acid Transport SystemsDNA, ProtozoanHRMInfectious diseasesLeishmania discriminationPCR

Identifiers

PMID30012182
PMCPMC6048756
OpenAlexW2884800309

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.