Evidence map›Paper›PMID 30010910›Full record

ArticleHuman molecular genetics2018

Identification of a novel, methylation-dependent, RUNX2 regulatory region associated with osteoarthritis risk.

Sarah J Rice, Guillaume Aubourg, Antony K Sorial, David Almarza, Maria Tselepi, David J Deehan, Louise N Reynard, John Loughlin

Open access · hybridAbstract read
In one paragraph

Article in Human molecular genetics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
3.8field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 51 citations in OpenAlex.

  1. Mechanoepigenetics in musculoskeletal disease.Osteoarthritis and cartilage · 2026
    Review
  2. Review
  3. Article
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  5. Article
  6. Article
  7. Review
  8. Hypomethylation of theInternational journal of molecular sciences · 2024
    Article
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  10. Review
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  20. An epigenome-wide view of osteoarthritis in primary tissues.American journal of human genetics · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Sarah J RiceInstitute of Genetic Medicine, Newcastle University, International Centre for Life, NE1 3BZ, UK.
Guillaume AubourgInstitute of Genetic Medicine, Newcastle University, International Centre for Life, NE1 3BZ, UK.
Antony K SorialInstitute of Genetic Medicine, Newcastle University, International Centre for Life, NE1 3BZ, UK.
David AlmarzaInstitute of Genetic Medicine, Newcastle University, International Centre for Life, NE1 3BZ, UK.
Maria TselepiInstitute of Genetic Medicine, Newcastle University, International Centre for Life, NE1 3BZ, UK.
David J DeehanNewcastle University Teaching Hospitals NHS Trust, Freeman Hospital, High Heaton, NE1 7DN, UK.
Louise N ReynardInstitute of Genetic Medicine, Newcastle University, International Centre for Life, NE1 3BZ, UK.
John LoughlinInstitute of Genetic Medicine, Newcastle University, International Centre for Life, NE1 3BZ, UK.
Centre for Life · GBFreeman Hospital · GB

Funding

Arthritis Research UK 20771Medical Research Council JXR 10641Medical Research Council MR/P020941/1Versus Arthritis 20771
6 · The paper itself

Abstract

Osteoarthritis (OA) is a common, multifactorial and polygenic skeletal disease that, in its severest form, requires joint replacement surgery to restore mobility and to relieve chronic pain. Using tissues from the articulating joints of 260 patients with OA and a range of in vitro experiments, including CRISPR-Cas9, we have characterized an intergenic regulatory element. Here, genotype at an OA risk locus correlates with differential DNA methylation, with altered gene expression of both a transcriptional regulator (RUNX2), and a chromatin remodelling protein (SUPT3H). RUNX2 is a strong candidate for OA susceptibility, with its encoded protein being essential for skeletogenesis and healthy joint function. The OA risk locus includes single nucleotide polymorphisms (SNPs) located within and flanking the differentially methylated region (DMR). The OA association SNP, rs10948172, demonstrates particularly strong correlation with methylation, and two intergenic SNPs falling within the DMR (rs62435998 and rs62435999) demonstrate genetic and epigenetic effects on the regulatory activity of this region. We therefore posit that the OA signal mediates its effect by modulating the methylation of the regulatory element, which then impacts on gene expression, with RUNX2 being the principal target. Our study highlights the interplay between DNA methylation, OA genetic risk and the downstream regulation of genes critical to normal joint function.

Indexed as

AdultAgedAged, 80 and overCore Binding Factor Alpha 1 SubunitCRISPR-Cas SystemsDNA MethylationFemaleGene Expression RegulationGenetic Predisposition to DiseaseGenotypeHumansJointsMaleMiddle AgedOsteoarthritisPolymorphism, Single NucleotideCore Binding Factor Alpha 1 SubunitRUNX2 protein, humanSUPT3H protein, humanTranscription Factors

Identifiers

PMID30010910
PMCPMC6140783
OpenAlexW2883663896

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.