Evidence map›Paper›PMID 30008175›Full record

Trial reportMolecular genetics & genomic medicine2018

Exome sequencing of 85 Williams-Beuren syndrome cases rules out coding variation as a major contributor to remaining variance in social behavior.

Nathan D Kopp, Phoebe C R Parrish, Michael Lugo, Joseph D Dougherty, Beth A Kozel

Abstract readClinical Trial
In one paragraph

Trial report in Molecular genetics & genomic medicine, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Trial
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  4. Article
  5. Article
  6. Genome-wide association studies identify polygenic effects for completed suicide in the Japanese population.Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology · 2019
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Nathan D KoppDepartment of Genetics, Washington University School of Medicine, St. Louis, Missouri.ORCID 0000-0002-0858-3242
Phoebe C R ParrishNational Heart Lung and Blood Institute, National Institutes of Health, Bethesda, Maryland.
Michael LugoNational Heart Lung and Blood Institute, National Institutes of Health, Bethesda, Maryland.
Joseph D DoughertyDepartment of Genetics, Washington University School of Medicine, St. Louis, Missouri.
Beth A KozelNational Heart Lung and Blood Institute, National Institutes of Health, Bethesda, Maryland.

Funding

Autism Genetics, Phase II: Increasing Representation of Human DiversityR01MH100027 · NIMH · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI GESCHWIND, DANIEL H · 2013 to 2024
$31.7M
Modifiers of elastin arteriopathyZIAHL006212 · NHLBI · NATIONAL HEART, LUNG, AND BLOOD INSTITUTE · PI KOZEL, BETH · 2016 to 2024
$9.7M
REGULATION OF MAMMALIAN SOCIAL BEHAVIOR BY THE GTF2I FAMILY OF PROTEINSR01MH107515 · NIMH · WASHINGTON UNIVERSITY · PI DOUGHERTY, JOSEPH D · 2016 to 2020
$2.4M
MASSIVELY PARALLEL CHARACTERIZATION OF CIS-REGULATORY ELEMENTS IN THE BRAINR01HG008687 · NHGRI · WASHINGTON UNIVERSITY · PI COHEN, BARAK A · 2015 to 2017
$1.1M
Autism Science FoundationNHGRI NIH HHS R01 HG008687NIH HHS 1R01MH107515-01A1NIH HHS 5R01HG008687-02NIH HHS 9R01MH100027-06NIH HHS HL006212-01NIMH NIH HHS R01 MH100027NIMH NIH HHS R01 MH107515
6 · The paper itself

Abstract

backgroundLarge, multigenic deletions at chromosome 7q11.23 result in a highly penetrant constellation of physical and behavioral symptoms known as Williams-Beuren syndrome (WS). Of particular interest is the unusual social-cognitive profile evidenced by deficits in social cognition and communication reminiscent of autism spectrum disorders (ASD) that are juxtaposed with normal or even relatively enhanced social motivation. Interestingly, duplications in the same region also result in ASD-like phenotypes as well as social phobias. Thus, the region clearly regulates human social motivation and behavior, yet the relevant gene(s) have not been definitively identified.

methodHere, we deeply phenotyped 85 individuals with WS and used exome sequencing to analyze common and rare variation for association with the remaining variance in social behavior as assessed by the Social Responsiveness Scale.

resultsWe replicated the previously reported unusual juxtaposition of behavioral symptoms in this new patient collection, but we did not find any new alleles of large effect in the targeted analysis of the remaining copy of genes in the Williams syndrome critical region. However, we report on two nominally significant SNPs in two genes that have been implicated in the cognitive and social phenotypes of Williams syndrome, BAZ1B and GTF2IRD1. Secondary discovery driven explorations focusing on known ASD genes and an exome wide scan do not highlight any variants of a large effect.

conclusionsWhole exome sequencing of 85 individuals with WS did not support the hypothesis that there are variants of large effect within the remaining Williams syndrome critical region that contribute to the social phenotype. This deeply phenotyped and genotyped patient cohort with a defined mutation provides the opportunity for similar analyses focusing on noncoding variation and/or other phenotypic domains.

Indexed as

Chromosome DeletionExome SequencingSocial BehaviorAdolescentAdultAgedBromodomain Containing ProteinsChildChild, PreschoolChromosomes, Human, Pair 7ExomeFemaleHumansMaleMiddle AgedMuscle ProteinsBAZ1B protein, humanBromodomain Containing ProteinsGTF2IRD1 protein, humanMuscle ProteinsNuclear ProteinsTrans-ActivatorsTranscription Factorsautism spectrum disorderexome variationsocial responsiveness scaleWilliams-Beuren syndrome

Identifiers

PMID30008175
PMCPMC6160704

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.