Evidence map›Paper›PMID 30006568›Full record

ArticleScientific reports2018

VHL inactivation without hypoxia is sufficient to achieve genome hypermethylation.

Artem V Artemov, Nadezhda Zhigalova, Svetlana Zhenilo, Alexander M Mazur, Egor B Prokhortchouk

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.6field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Article
  3. Von Hippel-Lindau/Hypoxia Inducible Factor Axis in Glioblastoma.International journal of molecular sciences · 2025
    Review
  4. Review
  5. Article
  6. Article
  7. Review
  8. Article
  9. Review
  10. Review
  11. Kaiso Regulates DNA Methylation Homeostasis.International journal of molecular sciences · 2021
    Article
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Artem V ArtemovInstitute of Bioengineering, Research Center of Biotechnology RAS, Moscow, Russia. artem.v.artemov@gmail.com.
Nadezhda ZhigalovaInstitute of Bioengineering, Research Center of Biotechnology RAS, Moscow, Russia.
Svetlana ZheniloInstitute of Bioengineering, Research Center of Biotechnology RAS, Moscow, Russia.
Alexander M MazurInstitute of Bioengineering, Research Center of Biotechnology RAS, Moscow, Russia.
Egor B ProkhortchoukInstitute of Bioengineering, Research Center of Biotechnology RAS, Moscow, Russia. prokhortchouk@gmail.com.
Bioengineering Center · RU

Funding

Russian Science Foundation (RSF) 14-14-01202
6 · The paper itself

Abstract

VHL inactivation is a key oncogenic event for renal carcinomas. In normoxia, VHL suppresses HIF1a-mediated transcriptional response, which is characteristic to hypoxia. It has previously been shown that hypoxic conditions inhibit TET-dependent hydroxymethylation of cytosines and cause DNA hypermethylation at gene promoters. In this work, we performed VHL inactivation by CRISPR/Cas9 and studied its effects on gene expression and DNA methylation. We showed that even without hypoxia, VHL inactivation leads to hypermethylation of the genome. Hypermethylated cytosines were evenly distributed throughout the genome with a slight preference for AP-1 (JUN and FOS) binding sites. Hypermethylated cytosines tended to be enriched within the binding sites of transcription factors that showed increased gene expression after VHL inactivation. We also observed promoter hypermethylation associated with decreased gene expression for several regulators of transcription and DNA methylation including SALL3.

Indexed as

DNA MethylationGene Expression Regulation, NeoplasticCarcinoma, Renal CellCell Line, TumorCRISPR-Cas SystemsCytosineGene SilencingGenome, HumanHomeodomain ProteinsHumansHypoxia-Inducible Factor 1, alpha SubunitKidney NeoplasmsPromoter Regions, GeneticTranscription FactorsTumor HypoxiaVon Hippel-Lindau Tumor Suppressor ProteinCytosineHIF1A protein, humanHomeodomain ProteinsHypoxia-Inducible Factor 1, alpha SubunitSALL3 protein, humanTranscription FactorsVHL protein, humanVon Hippel-Lindau Tumor Suppressor Protein

Identifiers

PMID30006568
PMCPMC6045645
OpenAlexW2951654275

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.