Evidence map›Paper›PMID 30005022›Full record

ArticleAIDS (London, England)2018

Low levels of HIV-1 envelope-mediated fusion are associated with long-term survival of an infected CCR5-/- patient.

Paul R Gorry, Fahim Ahmad, Jon Mohl, Ghalib Alkhatib

Abstract read
In one paragraph

Article in AIDS (London, England), 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Genetic diversity of MERS-CoV spike protein gene in Saudi Arabia.Journal of infection and public health · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Paul R GorrySchool of Health and Biomedical Science, RMIT University, Melbourne, Victoria, Australia.
Fahim AhmadComputational Science Program, University of Texas at El Paso.
Jon MohlComputational Science Program, University of Texas at El Paso.
Ghalib AlkhatibTexas Tech University Health Sciences Center, Department of Biomedical Sciences, El Paso, Texas.

Funding

Host Cell Factors and AIDS PathogenesisR01AI052019 · NIAID · TEXAS TECH UNIVERSITY HEALTH SCIS CENTER · PI ALKHATIB, GHALIB ABBAS · 2002 to 2013
$4.0M
NIAID NIH HHS R01 AI052019
6 · The paper itself

Abstract

objectivesThis study investigated whether Env-mediated fusion levels of R5X4 viruses are associated with long-term survival of an infected CCR5-/- patient.

designFour R5X4 Envs were cloned from each of two infected homosexual individuals (DR and C2) homozygous for the CCR5Δ32 allele. DR is a long-term survivor chronically infected with HIV-1 and his Envs were cloned 12 years after testing HIV-infected, whereas C2 Envs were isolated 1 year after primary infection.

methodsThe current study sequenced the gp41 subunits and created hybrid Envs that contained exchanged gp41 subunits or V3 loops. The Env-mediated fusion activity of Envs was examined in cell fusion and virus infection assays.

resultsSequence analysis indicated novel polymorphisms in the gp41 subunits of C2 and DR, and revealed sequence homology between DR and certain long-term nonprogressors. The DR Envs consistently showed lower Env-mediated fusion, smaller size, and delayed onset of syncytia formation. Envs containing swapped gp41 regions resulted in the transfer of most of the fusion phenotype and in the shift of the inhibition concentration 50 (IC50) of the inhibitory T20 peptide. In contrast, Envs with swapped V3 domains resulted in the partial transfer of the fusion phenotype and no significant change in the IC50 of T20.

conclusionsEnv sequence polymorphisms identified two distinct fusion phenotypes isolated from infected CCR5-/- patients. Swapping experiments confirmed DR's low fusion phenotype. Env-mediated fusion is a critical factor among others contributing to long-term survival.

Indexed as

HIV Long-Term SurvivorsVirus InternalizationHIV-1HIV Envelope Protein gp41HIV InfectionsHumansMalePolymorphism, GeneticReceptors, CCR5Sequence Analysis, DNACCR5 protein, humangp41 protein, Human immunodeficiency virus 1HIV Envelope Protein gp41Receptors, CCR5

Identifiers

PMID30005022
PMCPMC6239422

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.