Evidence map›Paper›PMID 30003320›Full record

ReviewChromosoma2018

Making ends meet: targeted integration of DNA fragments by genome editing.

Yutaka Yamamoto, Susan A Gerbi

Abstract readReview
In one paragraph

Review in Chromosoma, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Review
  9. Review
  10. Article
  11. Review
  12. Review
  13. Pigs with anFrontiers in cell and developmental biology · 2023
    Article
  14. Genome Editing Using Cas9 Ribonucleoprotein Is Effective for IntroducingInternational journal of molecular sciences · 2022
    Article
  15. Targeted DNA insertion in plants.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Efficient Nuclease-Directed Integration of Lentivirus Vectors into the Human Ribosomal DNA Locus.Molecular therapy : the journal of the American Society of Gene Therapy · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Yutaka YamamotoDepartment of Molecular Biology, Cell Biology and Biochemistry, Brown University Division of Biology and Medicine, Sidney Frank Hall room 260, 185 Meeting Street, Providence, RI, 02912, USA.
Susan A GerbiDepartment of Molecular Biology, Cell Biology and Biochemistry, Brown University Division of Biology and Medicine, Sidney Frank Hall room 260, 185 Meeting Street, Providence, RI, 02912, USA. Susan_Gerbi@Brown.edu.

Funding

DNA Amplification in the Sciara GenomeR01GM121455 · NIGMS · BROWN UNIVERSITY · PI GERBI, SUSAN A · 2017 to 2021
$1.4M
Mapping Origins of DNA Replication in the GenomeR01HG008160 · NHGRI · BROWN UNIVERSITY · PI GERBI, SUSAN A · 2015 to 2017
$975k
NHGRI NIH HHS R01 HG008160NIGMS NIH HHS R01 GM121455
6 · The paper itself

Abstract

Targeted insertion of large pieces of DNA is an important goal of genetic engineering. However, this goal has been elusive since classical methods for homology-directed repair are inefficient and often not feasible in many systems. Recent advances are described here that enable site-specific genomic insertion of relatively large DNA with much improved efficiency. Using the preferred repair pathway in the cell of nonhomologous end-joining, DNA of up to several kb could be introduced with remarkably good precision by the methods of HITI and ObLiGaRe with an efficiency up to 30-40%. Recent advances utilizing homology-directed repair (methods of PITCh; short homology arms including ssODN; 2H2OP) have significantly increased the efficiency for DNA insertion, often to 40-50% or even more depending on the method and length of DNA. The remaining challenges of integration precision and off-target site insertions are summarized. Overall, current advances provide major steps forward for site-specific insertion of large DNA into genomes from a broad range of cells and organisms.

Indexed as

CRISPR-Cas SystemsDNA RepairAnimalsChromosomesDNADNA Breaks, Double-StrandedDNA End-Joining RepairGene EditingGenomeHumansPlasmidsRecombination, GeneticRNA, Guide, CRISPR-Cas SystemsTranscription Activator-Like Effector NucleasesZinc Finger NucleasesDNARNA, Guide, CRISPR-Cas SystemsTranscription Activator-Like Effector NucleasesZinc Finger NucleasesGenome editing for site-specific insertion of large DNAHITI (homology-independent targeted integration)ObLiGaRe(obligate ligation-gated recombination)PITCh (precise integration into target chromosome)Programmable nucleases of ZFN, TALENs, and CRISPR-Cas9ssODN (single-strand oligodeoxynucleotide)

Identifiers

PMID30003320
PMCPMC6330168

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.