Evidence map›Paper›PMID 30003124›Full record

ArticleCellular and molecular gastroenterology and hepatology2018

E47 Governs the MYC-CDKN1B/p27

Kathleen M Scully, Reyhaneh Lahmy, Lia Signaevskaia, Roman Sasik, Rachel Medal, Heejung Kim, Randall French, Brian James, Yifan Wu, Andrew M Lowy and 1 more

Open access · goldAbstract read
In one paragraph

Article in Cellular and molecular gastroenterology and hepatology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.8field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Is there a CDKN2A-centric networkOncoTargets and therapy · 2020
    Review
  7. Review
  8. Article
  9. Article
  10. Beyond Kras: MYC Rules in Pancreatic Cancer.Cellular and molecular gastroenterology and hepatology · 2018
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 2 countries.

Kathleen M ScullyDevelopment, Aging and Regeneration Program, Sanford Burnham Prebys Medical Discovery Institute, La Jolla, California.
Reyhaneh LahmyDevelopment, Aging and Regeneration Program, Sanford Burnham Prebys Medical Discovery Institute, La Jolla, California.
Lia SignaevskaiaDevelopment, Aging and Regeneration Program, Sanford Burnham Prebys Medical Discovery Institute, La Jolla, California.
Roman SasikCenter for Computational Biology and Bioinformatics, School of Medicine.
Rachel MedalDevelopment, Aging and Regeneration Program, Sanford Burnham Prebys Medical Discovery Institute, La Jolla, California.
Heejung KimDevelopment, Aging and Regeneration Program, Sanford Burnham Prebys Medical Discovery Institute, La Jolla, California.
Randall FrenchDepartment of Surgery, Division of Surgical Oncology, Moores Cancer Center.
Brian JamesGenomics Core, Sanford Burnham Prebys Medical Discovery Institute, La Jolla, California.
Yifan WuDevelopment, Aging and Regeneration Program, Sanford Burnham Prebys Medical Discovery Institute, La Jolla, California.
Andrew M LowyDepartment of Surgery, Division of Surgical Oncology, Moores Cancer Center.
Pamela Itkin-AnsariDevelopment, Aging and Regeneration Program, Sanford Burnham Prebys Medical Discovery Institute, La Jolla, California.
Sanford Burnham Prebys Medical Discovery Institute · USUniversity of California San Diego · US

Funding

Tumor Microenvironment and Cancer ImmunologyP30CA030199 · NCI · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI ELENA B PASQUALE · 1985 to 2026
$107.2M
Transgenic & Knock-out MouseP30DK063491 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Andrea L Hevener · 2003 to 2026
$40.4M
RON Receptor in Pancreatic Cancer Biology and TherapyR01CA155620 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI LOWY, ANDREW M · 2011 to 2021
$2.9M
Clinical and Transtional Science InstituteTL1TR000144 · NCATS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GRANDIS, JENNIFER RUBIN · 2012 to 2015
$643k
NCATS NIH HHS TL1 TR000144NCI NIH HHS P30 CA030199NCI NIH HHS R01 CA155620NIDDK NIH HHS P30 DK063491
6 · The paper itself

Abstract

BACKGROUND &

aimsOncogenic mutations in KRAS, coupled with inactivation of p53, CDKN2A/p16

methodsRNA sequencing was used to profile E47-dependent transcriptomes in 5 PDA cell lines. Gene Ontology analysis identified cell-cycle control as the most altered pathway. Small interfering RNA/short hairpin RNA knockdown, small-molecule inhibitors, and viral expression were used to examine the function of E47-dependent genes in cell-cycle arrest. Cell morphology, expression of molecular markers, and senescence-associated β-galactosidase activity assays identified cellular senescence.

resultsE47 uniformly inhibited PDA cell-cycle progression by decreasing expression of MYC, increasing the level of CDKN1B/p27

conclusionsE47 governs a highly conserved network of cell-cycle control genes, including MYC, CDKN1B/p27

Indexed as

bHLHbHLH, basic helix-loop-helixCDK, cyclin-dependent kinaseCDKN1B/p27KIP1, CDKN1B/p27Kinase Inhibitory Protein 1CDKN2A/p16INK4A, CDKN2A/p16Inhibitor of CDK 4ACEBP-α, CCAAT/enhancer binding protein alphaCell CycleCENP-A, centromere protein ACIP, Cyclin-Dependent Kinase Inhibitor 1DDR, DNA damage responseERK, extracellular signal–regulated kinaseGO, Gene OntologyINK, Inhibitor of CDKKIP, Kinase Inhibitory Proteinlfdr, local false discovery ratemRNA, messenger RNAMSCV, murine stem cell virusOIS, oncogene-induced senescencePancreatic Ductal AdenocarcinomaPCR, polymerase chain reactionPDA, pancreatic ductal adenocarcinomaRB, retinoblastomaRNA-seq, RNA sequencingSA-βgal, senescence-associated β-galactosidaseSenescenceshRB, short hairpin RNA directed against RBshRNA, short hairpin RNAsi-p27, small interfering RNA directed against p27SKP, S-phase Kinase-associated

Identifiers

PMID30003124
PMCPMC6039985
OpenAlexW2804409169

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.