Evidence map›Paper›PMID 30002392›Full record

ArticleScientific reports2018

The tomato subtilase family includes several cell death-related proteinases with caspase specificity.

Sven Reichardt, Dagmar Repper, Alexander I Tuzhikov, Raisa A Galiullina, Marc Planas-Marquès, Nina V Chichkova, Andrey B Vartapetian, Annick Stintzi, Andreas Schaller

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 38 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed, 1 pooled it
2.6field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 1 synthesis or guideline pooled it, 67 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Plant subtilases as key initiators of peptide ligand-receptor signaling.The Plant journal : for cell and molecular biology · 2026
    Review
  5. Review
  6. Article
  7. Article
  8. Article
  9. Long-Term Phytaspase Responses inInternational journal of molecular sciences · 2025
    Article
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  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 3 countries.

Sven ReichardtInstitute of Plant Physiology and Biotechnology, University of Hohenheim, 70593, Stuttgart, Germany.
Dagmar RepperInstitute of Plant Physiology and Biotechnology, University of Hohenheim, 70593, Stuttgart, Germany.
Alexander I TuzhikovBelozersky Institute of Physico-Chemical Biology, Moscow State University, Moscow, 119991, Russia.
Raisa A GaliullinaBelozersky Institute of Physico-Chemical Biology, Moscow State University, Moscow, 119991, Russia.
Marc Planas-MarquèsCentre for Research in Agricultural Genomics, CSIC-IRTA-UAB-UB, Campus UAB, Bellaterra, Barcelona, 08193, Spain.
Nina V ChichkovaBelozersky Institute of Physico-Chemical Biology, Moscow State University, Moscow, 119991, Russia.
Andrey B VartapetianBelozersky Institute of Physico-Chemical Biology, Moscow State University, Moscow, 119991, Russia.
Annick StintziInstitute of Plant Physiology and Biotechnology, University of Hohenheim, 70593, Stuttgart, Germany.ORCID http://orcid.org/0000-0002-6479-8184
Andreas SchallerInstitute of Plant Physiology and Biotechnology, University of Hohenheim, 70593, Stuttgart, Germany. andreas.schaller@uni-hohenheim.de.ORCID http://orcid.org/0000-0001-6872-9576
Lomonosov Moscow State University · RUUniversity of Hohenheim · DECenter for Research in Agricultural Genomics · ES

Funding

Deutsche Forschungsgemeinschaft (German Research Foundation) SCHA 591/8-1Russian Foundation for Basic Research (RFBR) 14-04-91330Russian Science Foundation (RSF) 16-14-10043
6 · The paper itself

Abstract

Phytaspases are Asp-specific subtilisin-like plant proteases that have been likened to animal caspases with respect to their regulatory function in programmed cell death (PCD). We identified twelve putative phytaspase genes in tomato that differed widely in expression level and tissue-specific expression patterns. Most phytaspase genes are tandemly arranged on tomato chromosomes one, four, and eight, and many belong to taxon-specific clades, e.g. the P69 clade in the nightshade family, suggesting that these genes evolved by gene duplication after speciation. Five tomato phytaspases (SlPhyts) were expressed in N. benthamiana and purified to homogeneity. Substrate specificity was analyzed in a proteomics assay and with a panel of fluorogenic peptide substrates. Similar to animal caspases, SlPhyts recognized an extended sequence motif including Asp at the cleavage site. Clear differences in cleavage site preference were observed implying different substrates in vivo and, consequently, different physiological functions. A caspase-like function in PCD was confirmed for five of the seven tested phytaspases. Cell death was triggered by ectopic expression of SlPhyts 2, 3, 4, 5, 6 in tomato leaves by agro-infiltration, as well as in stably transformed transgenic tomato plants. SlPhyts 3, 4, and 5 were found to contribute to cell death under oxidative stress conditions.

Indexed as

ApoptosisCaspasesCell DeathEctopic Gene ExpressionGene DuplicationGenes, PlantNicotianaOxidative StressPlant LeavesPlant ProteinsPlants, Genetically ModifiedProteomicsSolanum lycopersicumSubstrate SpecificityCaspasesPlant Proteins

Identifiers

PMID30002392
PMCPMC6043521
OpenAlexW2845534270

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.