Evidence map›Paper›PMID 30002377›Full record

ArticleNature communications2018

Molecular basis for the inhibition of the methyl-lysine binding function of 53BP1 by TIRR.

Jiaxu Wang, Zenglin Yuan, Yaqi Cui, Rong Xie, Guang Yang, Muzaffer A Kassab, Mengxi Wang, Yinliang Ma, Chen Wu, Xiaochun Yu and 1 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.0field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 25 citations in OpenAlex.

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  15. RNA: a double-edged sword in genome maintenance.Nature reviews. Genetics · 2020
    Review
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Jiaxu WangCollege of Life Sciences, Hebei University, Baoding, 071000, Hebei, China.
Zenglin YuanState Key Laboratory of Microbial Technology, Shandong University, Jinan, 250100, Shandong, China.ORCID http://orcid.org/0000-0003-0517-8249
Yaqi CuiCollege of Life Sciences, Hebei University, Baoding, 071000, Hebei, China.
Rong XieCollege of Life Sciences, Hebei University, Baoding, 071000, Hebei, China.
Guang YangDepartment of Cancer Genetics and Epigenetics, Beckman Research Institute, City of Hope, 1500 East Duarte Road, Duarte, CA, 91010, USA.
Muzaffer A KassabDepartment of Cancer Genetics and Epigenetics, Beckman Research Institute, City of Hope, 1500 East Duarte Road, Duarte, CA, 91010, USA.
Mengxi WangCollege of Life Sciences, Hebei University, Baoding, 071000, Hebei, China.
Yinliang MaCollege of Life Sciences, Hebei University, Baoding, 071000, Hebei, China.
Chen WuCollege of Life Sciences, Hebei University, Baoding, 071000, Hebei, China.
Xiaochun YuDepartment of Cancer Genetics and Epigenetics, Beckman Research Institute, City of Hope, 1500 East Duarte Road, Duarte, CA, 91010, USA. xyu@coh.org.
Xiuhua LiuCollege of Life Sciences, Hebei University, Baoding, 071000, Hebei, China. liuxiuhua_2004@163.com.
City of Hope · USHebei University · CNCity Of Hope National Medical Center · USShandong University · CN

Funding

Regulation of Ionizing Radiation-Induced DNA Damage ResponseR01CA130899 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI LIU, YILUN · 2009 to 2023
$5.5M
Molecular Mechanisms of BRCA1-Dependent DNA Damage Response and TumorogenesisR01CA132755 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI SHEN, BINGHUI · 2008 to 2019
$3.5M
Functional analysis of BRCA1 in DNA damage response and tumor suppressionR01CA187209 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI YU, XIAOCHUN · 2014 to 2018
$1.7M
Functional analysis of the TET2/OGT complex in epigenetic modificationsR01GM108647 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI YU, XIAOCHUN · 2015 to 2018
$1.3M
NCI NIH HHS R01 CA130899NCI NIH HHS R01 CA132755NCI NIH HHS R01 CA187209NIGMS NIH HHS R01 GM108647
6 · The paper itself

Abstract

53BP1 performs essential functions in DNA double-strand break (DSB) repair and it was recently reported that Tudor interacting repair regulator (TIRR) negatively regulates 53BP1 during DSB repair. Here, we present the crystal structure of the 53BP1 tandem Tudor domain (TTD) in complex with TIRR. Our results show that three loops from TIRR interact with 53BP1 TTD and mask the methylated lysine-binding pocket in TTD. Thus, TIRR competes with histone H4K20 methylation for 53BP1 binding. We map key interaction residues in 53BP1 TTD and TIRR, whose mutation abolishes complex formation. Moreover, TIRR suppresses the relocation of 53BP1 to DNA lesions and 53BP1-dependent DNA damage repair. Finally, despite the high-sequence homology between TIRR and NUDT16, NUDT16 does not directly interact with 53BP1 due to the absence of key residues required for binding. Taken together, our study provides insights into the molecular mechanism underlying TIRR-mediated suppression of 53BP1-dependent DNA damage repair.

Indexed as

DNA Breaks, Double-StrandedDNA RepairBinding, CompetitiveCarrier ProteinsCrystallography, X-RayDNADNA DamageHEK293 CellsHistonesHumansLysineMethylationMutationProtein BindingRNA-Binding ProteinsTumor Suppressor p53-Binding Protein 1Carrier ProteinsDNAHistonesLysineNUDT16L1 protein, humanRNA-Binding ProteinsTP53BP1 protein, humanTumor Suppressor p53-Binding Protein 1

Identifiers

PMID30002377
PMCPMC6043480
OpenAlexW2851014980

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.