Evidence map›Paper›PMID 30001518›Full record

ArticleCell host & microbe2018

Modular Traits of the Rhizobiales Root Microbiota and Their Evolutionary Relationship with Symbiotic Rhizobia.

Ruben Garrido-Oter, Ryohei Thomas Nakano, Nina Dombrowski, Ka-Wai Ma, AgBiome Team, Alice C McHardy, Paul Schulze-Lefert

Open access · bronzeAbstract read
In one paragraph

Article in Cell host & microbe, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 132 papers.

0numbers the graph read from it
0cells of the map it votes in
132citing papers in PubMed
52.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

132 citing papers in PubMed, 353 citations in OpenAlex.

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  12. Characterization ofInternational journal of systematic and evolutionary microbiology · 2025
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72 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Ruben Garrido-OterDepartment of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Cologne 50829, Germany; Cluster of Excellence on Plant Sciences, Dusseldorf 40225, Germany.
Ryohei Thomas NakanoDepartment of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Cologne 50829, Germany; Cluster of Excellence on Plant Sciences, Dusseldorf 40225, Germany.
Nina DombrowskiDepartment of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Cologne 50829, Germany; University of Texas Austin, Marine Science Institute, Port Aransas, TX 78373, USA.
Ka-Wai MaDepartment of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Cologne 50829, Germany.
AgBiome TeamAgBiome, 104 T.W. Alexander Drive, Building 1, Research Triangle Park, NC 27709, USA.
Alice C McHardyDepartment of Computational Biology of Infection Research, Helmholtz Center for Infection Research, Braunschweig 38124, Germany.
Paul Schulze-LefertDepartment of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Cologne 50829, Germany; Cluster of Excellence on Plant Sciences, Dusseldorf 40225, Germany. Electronic address: schlef@mpipz.mpg.de.
Cluster of Excellence on Plant Sciences · DEMax Planck Institute for Plant Breeding Research · DEHelmholtz Centre for Infection Research · DE

Funding

European Research Council
6 · The paper itself

Abstract

Rhizobia are a paraphyletic group of soil-borne bacteria that induce nodule organogenesis in legume roots and fix atmospheric nitrogen for plant growth. In non-leguminous plants, species from the Rhizobiales order define a core lineage of the plant microbiota, suggesting additional functional interactions with plant hosts. In this work, genome analyses of 1,314 Rhizobiales isolates along with amplicon studies of the root microbiota reveal the evolutionary history of nitrogen-fixing symbiosis in this bacterial order. Key symbiosis genes were acquired multiple times, and the most recent common ancestor could colonize roots of a broad host range. In addition, root growth promotion is a characteristic trait of Rhizobiales in Arabidopsis thaliana, whereas interference with plant immunity constitutes a separate, strain-specific phenotype of root commensal Alphaproteobacteria. Additional studies with a tripartite gnotobiotic plant system reveal that these traits operate in a modular fashion and thus might be relevant to microbial homeostasis in healthy roots.

Indexed as

Adaptation, BiologicalArabidopsisGene Expression ProfilingMicrobiotaNitrogenPlant ImmunityPlant RootsRhizobiaceaeRNA, Ribosomal, 16SSymbiosisWhole Genome SequencingNitrogenRNA, Ribosomal, 16Scommensalismmicrobiotaphylogenomicsplant immunityrhizobialessymbiosis

Identifiers

PMID30001518
PMCPMC6053594
OpenAlexW2867218809

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.