Evidence map›Paper›PMID 29998460›Full record

ArticleElectrophoresis2018

Nanopore label-free detection of single-nucleotide deletion in Baxα/BaxΔ2.

Xiaohan Chen, Liang Wang, Golbarg M Roozbahani, Youwen Zhang, Jialing Xiang, Xiyun Guan

Abstract read
In one paragraph

Article in Electrophoresis, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Review
  2. Novel candidate metastasis-associated genes for synovial sarcoma.Journal of cellular and molecular medicine · 2024
    Article
  3. Article
  4. Article
  5. Salt-Mediated Nanopore Detection of ADAM-17.ACS applied bio materials · 2019
    Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Xiaohan ChenDepartment of Chemistry, Illinois Institute of Technology, Chicago, IL, USA.
Liang WangChongqing Institute of Green and Intelligent Technology, Chinese Academy of Sciences, Chongqing, P. R. China.
Golbarg M RoozbahaniDepartment of Chemistry, Illinois Institute of Technology, Chicago, IL, USA.
Youwen ZhangDepartment of Chemistry, Illinois Institute of Technology, Chicago, IL, USA.
Jialing XiangDepartment of Biology, Illinois Institute of Technology, Chicago, IL, USA.
Xiyun GuanDepartment of Chemistry, Illinois Institute of Technology, Chicago, IL, USA.ORCID 0000-0003-2022-4872

Funding

Label-Free Nanopore Biosensor for Rapid, Ultrasensitive, and Multiplex Detection of Protease ActivitiesR15GM110632 · NIGMS · ILLINOIS INSTITUTE OF TECHNOLOGY · PI GUAN, XIYUN · 2014 to 2017
$746k
NIGMS NIH HHS 2R15GM110632-02NIGMS NIH HHS R15 GM110632
6 · The paper itself

Abstract

Baxα, a key tumor suppressor gene, will not be expressed correctly as a result of single nucleotide mutation in its microsatellite region; Instead, BaxΔ2, an isoform of Baxα, is often produced. In addition, lack of the exon 2 due to an alternative splicing, BaxΔ2 has the same sequence as Baxα except single base deletion from eight continuous guanines (G8) to G7. Most of the currently available methods for Bax∆2 detection are inefficient and time-consuming, and/or require the use of labels or dyes. In this work, we reported a label-free nanopore sensing strategy to differentiate between Baxα and BaxΔ2 with a DNA polymer as a molecular probe based on alternative spliced sequences. Two DNA molecules were designed to selectively detect Baxα and BaxΔ2, respectively. The method was rapid, accurate, and highly sensitive: picomolar concentrations of target nucleic acids could be detected in minutes. Our developed simple and fast nanopore-based detection strategy is not only useful for distinguishing between Baxα and Bax∆2, but also provides a useful tool for detection of other single-base mutations in genetic diagnosis.

Indexed as

Nanoporesbcl-2-Associated X ProteinDNADNA Mutational AnalysisHumansLimit of DetectionMolecular Diagnostic TechniquesMolecular Probe TechniquesSequence Deletionbcl-2-Associated X ProteinDNABaxGenetic diagnosisLabel-freeNanoporeNucleic acids

Identifiers

PMID29998460
PMCPMC6168411

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.