Evidence map›Paper›PMID 29997391›Full record

ArticleGenetics in medicine : official journal of the American College of Medical Genetics2019

Exome sequencing in congenital ataxia identifies two new candidate genes and highlights a pathophysiological link between some congenital ataxias and early infantile epileptic encephalopathies.

Stéphanie Valence, Emmanuelle Cochet, Christelle Rougeot, Catherine Garel, Sandra Chantot-Bastaraud, Elodie Lainey, Alexandra Afenjar, Marie-Anne Barthez, Nathalie Bednarek, Diane Doummar and 18 more

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In one paragraph

Article in Genetics in medicine : official journal of the American College of Medical Genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed, 3 pooled it
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 3 syntheses or guidelines pooled it, 54 citations in OpenAlex.

  1. Pooled it
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  3. Pooled it
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  16. Pathophysiological Roles of Auxiliary Calcium Channel αHandbook of experimental pharmacology · 2023
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  20. Highlighting the Dystonic Phenotype Related to GNAO1.Movement disorders : official journal of the Movement Disorder Society · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

28 authors at 11 institutions in 1 country.

Stéphanie ValenceAPHP, GHUEP, Hôpital Armand Trousseau, Service de Neurologie Pédiatrique, Paris, France.
Emmanuelle CochetCentre de Référence Maladies Rares "Malformations et Maladies Congénitales du Cervelet", Paris-Lyon-Lille, France.
Christelle RougeotCentre de Référence Maladies Rares "Malformations et Maladies Congénitales du Cervelet", Paris-Lyon-Lille, France.
Catherine GarelCentre de Référence Maladies Rares "Malformations et Maladies Congénitales du Cervelet", Paris-Lyon-Lille, France.
Sandra Chantot-BastaraudCentre de Référence Maladies Rares "Malformations et Maladies Congénitales du Cervelet", Paris-Lyon-Lille, France.
Elodie LaineyAPHP, Hôpital Robert Debré, Service d'Hématologie Biologique, Paris, France.
Alexandra AfenjarCentre de Référence Maladies Rares "Malformations et Maladies Congénitales du Cervelet", Paris-Lyon-Lille, France.
Marie-Anne BarthezService de Neuropédiatrie et Handicaps, Hôpital Gatien de Clocheville, CHU Tours, France.
Nathalie BednarekService de Néonatologie, Institut Alix de Champagne, CHU Reims, Reims, France.
Diane DoummarAPHP, GHUEP, Hôpital Armand Trousseau, Service de Neurologie Pédiatrique, Paris, France.
Laurence FaivreCentre de Génétique et Centre de Référence Anomalies du Développement et Syndromes Malformatifs, Hôpital d'Enfants, Centre Hospitalier Universitaire de Dijon, Dijon, France.
Cyril GoizetCentre de référence Neurogénétique, Service de Génétique Médicale, Centre Hospitalier Universitaire de Bordeaux, Bordeaux, France.
Damien HayeCentre de Référence Maladies Rares "Malformations et Maladies Congénitales du Cervelet", Paris-Lyon-Lille, France.
Bénédicte HeronAPHP, GHUEP, Hôpital Armand Trousseau, Service de Neurologie Pédiatrique, Paris, France.
Isabelle KemlinAPHP, GHUEP, Hôpital Armand Trousseau, Service de Neurologie Pédiatrique, Paris, France.
Didier LacombeCentre de référence Neurogénétique, Service de Génétique Médicale, Centre Hospitalier Universitaire de Bordeaux, Bordeaux, France.
Mathieu MilhAix Marseille Univ, INSERM, UMR-S 1251, MMG, Marseille, France.
Marie-Laure MoutardAPHP, GHUEP, Hôpital Armand Trousseau, Service de Neurologie Pédiatrique, Paris, France.
Florence RiantAP-HP, Groupe Hospitalier Lariboisière-Fernand Widal, Laboratoire de Génétique, Paris, France.
Stéphanie RobinService de Pédiatrie, CHU de la Réunion - Hôpital Félix Guyon, Saint-Denis, France.
Agathe RoubertieCHU Gui de Chauliac, Service de Neurologie Pédiatrique, Montpellier, France.
Pierre SardaService de Génétique Médicale, Hôpital Arnaud de Villeneuve, Montpellier, France.
Annick ToutainCentre Hospitalier Universitaire de Tours, Service de Génétique, Tours, France.
Laurent VillardAix Marseille Univ, INSERM, UMR-S 1251, MMG, Marseille, France.
Dorothée VilleDépartement de Neurologie Pédiatrique et Centre de Référence des Epilepsies Rares, Hôpital Femme Mère Enfant, Hospices Civils de Lyon, Centre Hospitalier Universitaire de Lyon, Lyon, France.
Thierry Billette de VillemeurAPHP, GHUEP, Hôpital Armand Trousseau, Service de Neurologie Pédiatrique, Paris, France.
Diana RodriguezAPHP, GHUEP, Hôpital Armand Trousseau, Service de Neurologie Pédiatrique, Paris, France.
Lydie BurglenCentre de Référence Maladies Rares "Malformations et Maladies Congénitales du Cervelet", Paris-Lyon-Lille, France. lydie.burglen@aphp.fr.
Sorbonne Université · FRInserm · FRHôpital Femme Mère Enfant · FRUniversité de Bordeaux · FRAssistance Publique – Hôpitaux de Paris · FRCentre Hospitalier Universitaire de La Réunion · FRCentre Hospitalier Universitaire de Reims · FRCentre Hospitalier Universitaire de Tours · FRDélégation Paris 7 · FRHôpital Arnaud de Villeneuve · FRUniversité de Tours · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

purposeTo investigate the genetic basis of congenital ataxias (CAs), a unique group of cerebellar ataxias with a nonprogressive course, in 20 patients from consanguineous families, and to identify new CA genes.

methodsSingleton -exome sequencing on these 20 well-clinically characterized CA patients. We first checked for rare homozygous pathogenic variants, then, for variants from a list of genes known to be associated with CA or very early-onset ataxia, regardless of their mode of inheritance. Our replication cohort of 180 CA patients was used to validate the new CA genes.

resultsWe identified a causal gene in 16/20 families: six known CA genes (7 patients); four genes previously implicated in another neurological phenotype (7 patients); two new candidate genes (2 patients). Despite the consanguinity, 4/20 patients harbored a heterozygous de novo pathogenic variant.

conclusionSingleton exome sequencing in 20 consanguineous CA families led to molecular diagnosis in 80% of cases. This study confirms the genetic heterogeneity of CA and identifies two new candidate genes (PIGS and SKOR2). Our work illustrates the diversity of the pathophysiological pathways in CA, and highlights the pathogenic link between some CA and early infantile epileptic encephalopathies related to the same genes (STXBP1, BRAT1, CACNA1A and CACNA2D2).

Indexed as

AdolescentAtaxiaCerebellar AtaxiaChildChild, PreschoolCohort StudiesExomeExome SequencingFemaleFranceGenetic HeterogeneityGenetic Predisposition to DiseaseGenotypeHumansMaleMutationCerebellar atrophyCongenital ataxiaEarly infantile epileptic encephalopathiesexome sequencing,Pathophysiology

Identifiers

PMID29997391
OpenAlexW2865374766

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.