Evidence map›Paper›PMID 29996828›Full record

ArticleBMC biology2018

Structural complexity of the co-chaperone SGTA: a conserved C-terminal region is implicated in dimerization and substrate quality control.

Santiago Martínez-Lumbreras, Ewelina M Krysztofinska, Arjun Thapaliya, Alessandro Spilotros, Dijana Matak-Vinkovic, Enrico Salvadori, Peristera Roboti, Yvonne Nyathi, Janina H Muench, Maxie M Roessler and 3 more

Open access · goldAbstract read
In one paragraph

Article in BMC biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 19 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 2 countries.

Santiago Martínez-LumbrerasDepartment of Chemistry, King's College London, Britannia House, Trinity Street, London, SE1 1DB, UK.
Ewelina M KrysztofinskaDepartment of Chemistry, King's College London, Britannia House, Trinity Street, London, SE1 1DB, UK.
Arjun ThapaliyaDepartment of Chemistry, King's College London, Britannia House, Trinity Street, London, SE1 1DB, UK.
Alessandro SpilotrosEuropean Molecular Biology Laboratory, Hamburg Outstation, Notkestrasse 85, 22603, Hamburg, Germany.
Dijana Matak-VinkovicDepartment of Chemistry, University of Cambridge, Lensfield Road, Cambridge, CB2 1EW, UK.
Enrico SalvadoriSchool of Biological and Chemical Sciences, Queen Mary University of London, Mile End Road, London, E1 4NS, UK.
Peristera RobotiSchool of Biological Sciences, Faculty of Biology, Medicine and Health, University of Manchester, Manchester Academic Health Science Centre, The Michael Smith Building, Oxford Road, Manchester, M13 9PT, UK.
Yvonne NyathiSchool of Biological Sciences, Faculty of Biology, Medicine and Health, University of Manchester, Manchester Academic Health Science Centre, The Michael Smith Building, Oxford Road, Manchester, M13 9PT, UK.
Janina H MuenchDepartment of Chemistry, King's College London, Britannia House, Trinity Street, London, SE1 1DB, UK.
Maxie M RoesslerSchool of Biological and Chemical Sciences, Queen Mary University of London, Mile End Road, London, E1 4NS, UK.
Dmitri I SvergunEuropean Molecular Biology Laboratory, Hamburg Outstation, Notkestrasse 85, 22603, Hamburg, Germany.
Stephen HighSchool of Biological Sciences, Faculty of Biology, Medicine and Health, University of Manchester, Manchester Academic Health Science Centre, The Michael Smith Building, Oxford Road, Manchester, M13 9PT, UK.
Rivka L IsaacsonDepartment of Chemistry, King's College London, Britannia House, Trinity Street, London, SE1 1DB, UK. rivka.isaacson@kcl.ac.uk.ORCID 0000-0002-9978-8904
King's College London · GBManchester Academic Health Science Centre · GBEuropean Molecular Biology Laboratory · DEQueen Mary University of London · GBUniversity of Cambridge · GB

Funding

Biotechnology and Biological Sciences Research Council BB/J014567/1Biotechnology and Biological Sciences Research Council BB/L006510/1Biotechnology and Biological Sciences Research Council BB/L006952/1Biotechnology and Biological Sciences Research Council BB/N006267/1Cancer Research UK FC001029Medical Research Council FC001029Medical Research Council G0900936Medical Research Council MC_U117533887Wellcome Trust 204957/Z/16/ZWellcome Trust FC001029
6 · The paper itself

Abstract

backgroundProtein quality control mechanisms are essential for cell health and involve delivery of proteins to specific cellular compartments for recycling or degradation. In particular, stray hydrophobic proteins are captured in the aqueous cytosol by a co-chaperone, the small glutamine-rich, tetratricopeptide repeat-containing protein alpha (SGTA), which facilitates the correct targeting of tail-anchored membrane proteins, as well as the sorting of membrane and secretory proteins that mislocalize to the cytosol and endoplasmic reticulum-associated degradation. Full-length SGTA has an unusual elongated dimeric structure that has, until now, evaded detailed structural analysis. The C-terminal region of SGTA plays a key role in binding a broad range of hydrophobic substrates, yet in contrast to the well-characterized N-terminal and TPR domains, there is a lack of structural information on the C-terminal domain. In this study, we present new insights into the conformation and organization of distinct domains of SGTA and show that the C-terminal domain possesses a conserved region essential for substrate processing in vivo.

resultsWe show that the C-terminal domain region is characterized by α-helical propensity and an intrinsic ability to dimerize independently of the N-terminal domain. Based on the properties of different regions of SGTA that are revealed using cell biology, NMR, SAXS, Native MS, and EPR, we observe that its C-terminal domain can dimerize in the full-length protein and propose that this reflects a closed conformation of the substrate-binding domain.

conclusionOur results provide novel insights into the structural complexity of SGTA and provide a new basis for mechanistic studies of substrate binding and release at the C-terminal region.

Indexed as

Amino Acid SequenceAnimalsCarrier ProteinsCells, CulturedHumansHydrophobic and Hydrophilic InteractionsMagnetic Resonance ImagingMagnetic Resonance SpectroscopyMolecular ChaperonesProtein BindingProtein DomainsProtein MultimerizationProtein TransportScattering, Small AngleCarrier ProteinsMolecular ChaperonesSGTA protein, human

Identifiers

PMID29996828
PMCPMC6042327
OpenAlexW2829233200

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.