Evidence map›Paper›PMID 29995556›Full record

ArticleCell cycle (Georgetown, Tex.)2018

The role of SAGA coactivator complex in snRNA transcription.

V V Popova, A V Orlova, M M Kurshakova, J V Nikolenko, E N Nabirochkina, S G Georgieva, D V Kopytova

Open access · bronzeAbstract read
In one paragraph

Article in Cell cycle (Georgetown, Tex.), 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.3field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 10 citations in OpenAlex.

  1. Review
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  3. PCID2 Subunit of theCurrent issues in molecular biology · 2023
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

V V Popovaa Institute of Gene Biology, Russian Academy of Sciences , Moscow , Russia.ORCID 0000-0003-2726-1676
A V Orlovaa Institute of Gene Biology, Russian Academy of Sciences , Moscow , Russia.
M M Kurshakovaa Institute of Gene Biology, Russian Academy of Sciences , Moscow , Russia.ORCID 0000-0001-6772-6955
J V Nikolenkoa Institute of Gene Biology, Russian Academy of Sciences , Moscow , Russia.ORCID 0000-0001-5817-0705
E N Nabirochkinaa Institute of Gene Biology, Russian Academy of Sciences , Moscow , Russia.ORCID 0000-0002-7942-3924
S G Georgievaa Institute of Gene Biology, Russian Academy of Sciences , Moscow , Russia.ORCID 0000-0003-3665-0390
D V Kopytovaa Institute of Gene Biology, Russian Academy of Sciences , Moscow , Russia.ORCID 0000-0003-1086-6329
Institute of Gene Biology · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The general snRNA gene transcription apparatus has been extensively studied. However, the role of coactivators in this process is far from being clearly understood. Here, we have demonstrated that the Drosophila SAGA complex interacts with the PBP complex, the key component of the snRNA gene transcription apparatus, and is present at the promoter regions of the snRNA genes transcribed by both the RNA polymerase II and RNA polymerase III (U6 snRNA). We show that SAGA interacts with the Brf1 transcription factor, which is a part of the RNA polymerase III transcription apparatus and is present at promoters of a number of Pol III-transcribed genes. Mutations inactivating several SAGA subunit genes resulted in reduced snRNA levels in adult flies, indicating that SAGA is indeed the transcriptional coactivator for the snRNA genes. The transcription of the Pol II and Pol III-transcribed U genes was reduced by mutations in all tested SAGA complex subunits. Therefore, the transcription of the Pol II and Pol III-transcribed U genes was reduced by the mutations in the deubiquitinase module, as well as in the acetyltransferase module of the SAGA, indicating that the whole complex is essential for their transcription. Therefore, the SAGA complex activates snRNA genes suggesting its wide involvement in the regulation of gene transcription, and consequently, in the maintenance of cellular homeostasis.

Indexed as

Gene Expression RegulationAnimalsDNA-Binding ProteinsDrosophilaDrosophila ProteinsMultiprotein ComplexesMutationPromoter Regions, GeneticRNA Polymerase IIRNA Polymerase IIIRNA, Small NuclearTranscription FactorsTranscription Factor TFIIIBTranscription, GeneticBrf protein, DrosophilaDNA-Binding ProteinsDrosophila ProteinsMultiprotein ComplexesPbp45 protein, DrosophilaRNA Polymerase IIRNA Polymerase IIIRNA, Small NuclearTranscription FactorsTranscription Factor TFIIIBDUB moduleHATPolIII transcriptionSAGAsnRNA genessnRNA transcription

Identifiers

PMID29995556
PMCPMC6152534
OpenAlexW2815320688

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.