Evidence map›Paper›PMID 29995308›Full record

ArticleMolecular microbiology2018

Novel dual regulators of Pseudomonas aeruginosa essential for productive biofilms and virulence.

Yun Heacock-Kang, Jan Zarzycki-Siek, Zhenxin Sun, Kanchana Poonsuk, Andrew P Bluhm, Darlene Cabanas, Dawson Fogen, Ian A McMillan, Rungtip Chuanchuen, Tung T Hoang

Open access · bronzeAbstract read
In one paragraph

Article in Molecular microbiology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 21 citations in OpenAlex.

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  13. Persistence and Microevolution ofFrontiers in microbiology · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Yun Heacock-KangDepartment of Microbiology, University of Hawaii at Manoa, Honolulu, Hawaii, 96822, USA.ORCID 0000-0002-7304-9687
Jan Zarzycki-SiekDepartment of Microbiology, University of Hawaii at Manoa, Honolulu, Hawaii, 96822, USA.
Zhenxin SunDepartment of Microbiology, University of Hawaii at Manoa, Honolulu, Hawaii, 96822, USA.
Kanchana PoonsukDepartment of Veterinary Public Health, Chulalongkorn University, Bangkok, 10330, Thailand.
Andrew P BluhmDepartment of Microbiology, University of Hawaii at Manoa, Honolulu, Hawaii, 96822, USA.
Darlene CabanasDepartment of Microbiology, University of Hawaii at Manoa, Honolulu, Hawaii, 96822, USA.
Dawson FogenDepartment of Microbiology, University of Hawaii at Manoa, Honolulu, Hawaii, 96822, USA.
Ian A McMillanDepartment of Microbiology, University of Hawaii at Manoa, Honolulu, Hawaii, 96822, USA.
Rungtip ChuanchuenDepartment of Veterinary Public Health, Chulalongkorn University, Bangkok, 10330, Thailand.
Tung T HoangDepartment of Microbiology, University of Hawaii at Manoa, Honolulu, Hawaii, 96822, USA.
University of Hawaiʻi at Mānoa · USChulalongkorn University · TH

Funding

Functional Genomics of Single- and Mixed-Species Biofilms in Spatiotemporal ScaleR01GM103580 · NIGMS · UNIVERSITY OF HAWAII AT MANOA · PI HOANG, TUNG T · 2013 to 2016
$1.0M
Functional Characterization of Essential Burkholderia pseudomallei Virulence RegulatorsR21AI123913 · NIAID · UNIVERSITY OF HAWAII AT MANOA · PI HOANG, TUNG T · 2016 to 2017
$389k
NIAID NIH HHS R21 AI123913NIGMS NIH HHS R01 GM103580
6 · The paper itself

Abstract

Gene regulation network in Pseudomonas aeruginosa is complex. With a relatively large genome (6.2 Mb), there is a significant portion of genes that are proven or predicted to be transcriptional regulators. Many of these regulators have been shown to play important roles in biofilm formation and maintenance. In this study, we present a novel transcriptional regulator, PA1226, which modulates biofilm formation and virulence in P. aeruginosa. Mutation in the gene encoding this regulator abolished the ability of P. aeruginosa to produce biofilms in vitro, without any effect on the planktonic growth. This regulator is also essential for the in vivo fitness and pathogenesis in both Drosophila melanogaster and BALB/c mouse lung infection models. Transcriptome analysis revealed that PA1226 regulates many essential virulence genes/pathways, including those involved in alginate, pili, and LPS biosynthesis. Genes/operons directly regulated by PA1226 and potential binding sequences were identified via ChIP-seq. Attempts to confirm the binding sequences by electrophoretic mobility shift assay led to the discovery of a co-regulator, PA1413, via co-immunoprecipitation assay. PA1226 and PA1413 were shown to bind collaboratively to the promoter regions of their regulons. A model is proposed, summarizing our finding on this novel dual-regulation system.

Indexed as

AnimalsBacterial ProteinsBiofilmsDisease Models, AnimalDrosophila melanogasterGene Expression ProfilingHumansLung DiseasesMaleMiceMice, Inbred BALB CPseudomonas aeruginosaPseudomonas InfectionsTranscription FactorsVirulenceBacterial ProteinsTranscription Factors

Identifiers

PMID29995308
PMCPMC6158065
OpenAlexW2876874144

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.