Evidence map›Paper›PMID 29993583›Full record

ArticleIEEE/ACM transactions on computational biology and bioinformatics

Deep Learning for Drug Discovery and Cancer Research: Automated Analysis of Vascularization Images.

Gregor Urban, Kevin M Bache, Duc Phan, Agua Sobrino, Alexander Konstantinovich Shmakov, Stephanie J Hachey, Chris Hughes, Pierre Baldi

Abstract read
In one paragraph

Article in IEEE/ACM transactions on computational biology and bioinformatics. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Article
  2. Artificial intelligence as a tool in drug discovery and development.World journal of experimental medicine · 2024
    Review
  3. Review
  4. Review
  5. Article
  6. Article
  7. Review
  8. Article
  9. Review
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Classifying shoulder implants in X-ray images using deep learning.Computational and structural biotechnology journal · 2020
    Article
  16. Cancer Modeling-on-a-Chip with Future Artificial Intelligence Integration.Small (Weinheim an der Bergstrasse, Germany) · 2019
    Review
  17. Article
  18. Review
  19. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Gregor Urban
Kevin M Bache
Duc Phan
Agua Sobrino
Alexander Konstantinovich Shmakov
Stephanie J Hachey
Chris Hughes
Pierre Baldi

Funding

Univ.of Calif., Irvine Cancer Center Support GrantP30CA062203 · NCI · UNIVERSITY OF CALIFORNIA-IRVINE · PI Christine Hui · 1994 to 2026
$57.9M
Linking DDR2 expression, the cancer-associated fibroblast, and angiogenesis in the tumor microenvironmentUH3TR000481 · NCATS · WASHINGTON UNIVERSITY · PI GEORGE, STEVEN CARL · 2014 to 2016
$2.8M
Microphysiological systems to model vascular malformationsUG3HL141799 · NHLBI · UNIVERSITY OF CALIFORNIA-IRVINE · PI HUGHES, CHRISTOPHER C. W. · 2017 to 2018
$1.7M
(PQD5) Development of in Vitro Vascularized Microtumors for Drug ScreeningR01CA180122 · NCI · UNIVERSITY OF CALIFORNIA-IRVINE · PI HUGHES, CHRISTOPHER C. W. · 2013 to 2016
$1.2M
NCATS NIH HHS UH3 TR000481NCI NIH HHS P30 CA062203NCI NIH HHS R01 CA180122NHLBI NIH HHS UG3 HL141799
6 · The paper itself

Abstract

Likely drug candidates which are identified in traditional pre-clinical drug screens often fail in patient trials, increasing the societal burden of drug discovery. A major contributing factor to this phenomenon is the failure of traditional in vitro models of drug response to accurately mimic many of the more complex properties of human biology. We have recently introduced a new microphysiological system for growing vascularized, perfused microtissues that more accurately models human physiology and is suitable for large drug screens. In this work, we develop a machine learning model that can quickly and accurately flag compounds which effectively disrupt vascular networks from images taken before and after drug application in vitro. The system is based on a convolutional neural network and achieves near perfect accuracy while committing potentially no expensive false negatives.

Indexed as

Deep LearningImage Processing, Computer-AssistedAntineoplastic AgentsCell Culture TechniquesDrug DiscoveryExtracellular MatrixHumansMicroscopyNeoplasmsNeovascularization, PathologicNeural Networks, ComputerPattern Recognition, AutomatedAntineoplastic Agents

Identifiers

PMID29993583
PMCPMC7904235

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.